python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3405.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3405.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_710.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_10.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_11.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_155.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_105.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_552.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_552.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2583.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2583.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_310.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_310.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_177.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2585.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2585.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_326.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_172.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_123.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_930.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_930.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_578.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_578.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_217.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_2.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_4.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_1931.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_1931.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_266.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_678.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_678.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_2.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_3575.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_3575.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_727.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_727.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_3294.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_3294.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_1578.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_1578.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_1329.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_1329.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2868.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2868.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1726.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1726.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_383.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_383.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3903.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3903.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_1106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_1106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_415.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_415.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1781.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1781.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_812.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_812.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_196.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_164.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_143.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1406.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1406.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_315.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_386.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_399.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_193.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_128.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_215.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF454.bestfold.profile.pattern_0.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_GR_models_ZNF454.bestfold.profile.pattern_0.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_887.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_887.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_614.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_614.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_637.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_637.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_6.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_978.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_978.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_834.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_834.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF513/ZNF513-201-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF513/ZNF513-202-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_377.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_377.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_185.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_126.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_679.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_679.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_255.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_255.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_5.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_194.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_194.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_191.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_287.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_287.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_1771.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_1771.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1669.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1669.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_324.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_207.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2056.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2056.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_174.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_174.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_164.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_164.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5545.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5545.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_745.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_745.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_600.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_600.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_238.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_238.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_213.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_213.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_185.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_184.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_184.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_116.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_964.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_964.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_10.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_11.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_12.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_502.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_502.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_9.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4718.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4718.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_315.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_210.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_178.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_120.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_120.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_702.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_702.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6113.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_805.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_805.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_306.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_306.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_198.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_198.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_153.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_116.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_144.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_154.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4076.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4076.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_172.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_154.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_519.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_519.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_435.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_435.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_4.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_971.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_971.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_728.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_728.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_580.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_580.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_514.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_514.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_366.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_366.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_155.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_126.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_387.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6717.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6717.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_346.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_346.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_100.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_251.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1338.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1338.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_205.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_293.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_293.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_834.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_834.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2409.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2409.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_162.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_815.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_815.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_700.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_700.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_523.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_523.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_237.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_169.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_169.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1245.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1245.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2766.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2766.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_272.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_272.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_159.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_159.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_150.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_150.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_215.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_215.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_209.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_209.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_163.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1363.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1363.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_936.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_936.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_473.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_473.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_231.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1324.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1324.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1526.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1526.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1517.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1517.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5533.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5533.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1736.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1736.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_962.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_962.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_594.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_594.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_203.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_203.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_188.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_188.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_92.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF705G.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_199.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_130.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_338.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_338.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_297.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_297.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_27.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_27.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_28.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_28.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_253.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_205.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_0.n_122.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_0.n_122.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_1.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_2.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_2.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_3.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_4.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_585.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_585.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1350.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1350.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1323.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1323.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_1192.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_1192.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_100.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_599.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_599.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1018.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1018.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_291.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_92.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1827.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1827.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1722.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1722.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3261.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3261.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_105.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_8999.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_8999.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_323.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_323.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_185.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_185.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_226.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_226.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2020.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2020.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_10.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_10.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_11.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_11.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_785.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_785.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_612.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_612.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_466.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_466.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_406.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_284.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_284.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_242.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_242.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_179.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4274.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4274.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_291.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_176.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_9421.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_9421.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1113.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_367.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_367.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_315.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_315.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_296.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_296.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_275.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_275.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_145.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_6199.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_6199.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3396.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3396.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_227.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_241.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_241.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_6.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_7.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_220.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_158.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7682.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7682.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_878.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_878.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_761.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_761.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_527.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_527.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_461.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_461.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_931.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_931.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_134.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1036.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1036.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2440.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2440.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_357.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_357.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_273.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_818.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_818.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_1.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_11267.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_11267.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_320.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_320.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_1020.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_1020.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4522.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4522.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_219.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3475.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF436/ZNF436-201-vs-Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3475.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_788.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_788.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_6.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_904.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_904.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_270.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_270.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1454.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1454.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_635.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_635.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_172.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_172.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_87.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_146.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_133.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_133.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_85.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1754.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1754.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1079.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1079.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4449.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4449.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_326.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_326.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_173.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_153.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_153.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_831.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_831.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_387.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_387.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_1685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_1685.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_1175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_1175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_441.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_441.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_428.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_428.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_314.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_314.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_465.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_465.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_843.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_843.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF570.bestfold.profile.pattern_0.n_177.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF570/ZNF570-201-vs-ChipExo_models_ZNF570.bestfold.profile.pattern_0.n_177.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF570.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF570/ZNF570-201-vs-ChipExo_models_ZNF570.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_178.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1393.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1393.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1481.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1481.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_1224.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_1224.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_969.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_969.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_348.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_348.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_1016.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_1016.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_761.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_761.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_484.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_484.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_363.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_363.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_214.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_2907.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_2907.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2525.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2525.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1340.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1340.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_973.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_973.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_4.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_5.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4209.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4209.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_1769.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_1769.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1304.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1304.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_319.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_465.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_465.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_187.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_6.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_7.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_800.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_800.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8660.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8660.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_11.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_775.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_775.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_627.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_627.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_228.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_228.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_971.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_971.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_92.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1077.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1077.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_850.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_850.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_753.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_753.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_727.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_727.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_445.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_445.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_5.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_5.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_6.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_7.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4926.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4926.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_968.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_968.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_541.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_541.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_336.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_336.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_147.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_147.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_110.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_5990.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_5990.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_2.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_2.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_3.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_4.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_5.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_6.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1616.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1616.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_1059.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_1059.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_710.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_273.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_273.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_220.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_220.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_154.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_154.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_575.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_575.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_409.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_409.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_4.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_5.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_135.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_506.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_506.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3380.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3380.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_2050.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_2050.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_3983.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_3983.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_276.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_276.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_202.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_479.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_479.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_384.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_384.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_340.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_340.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_149.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_116.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_10.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_11.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_13.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_15.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_6.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_7.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_8.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_9.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_131.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_131.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2300.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2300.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2010.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2010.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1817.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1817.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_704.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_704.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_641.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_641.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_536.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_536.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_494.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_494.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_254.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_196.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_196.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_728.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_728.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_119.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_2.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_274.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_274.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_118.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_492.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_492.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_360.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_360.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_413.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_413.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4477.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4477.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_459.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_459.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3663.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3663.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_236.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_236.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1232.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1232.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6028.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6028.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_3.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4095.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4095.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_128.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_3.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_3723.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_3723.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2873.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2873.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_399.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_231.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_231.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1446.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_853.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_853.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_740.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_740.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_261.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_261.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1499.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1499.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_565.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_565.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_399.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_399.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_291.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_278.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_278.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_256.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8879.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8879.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_520.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_520.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_193.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1690.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1690.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_870.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_870.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_258.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_258.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_247.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_247.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_56.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_5.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_6.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_7.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_8.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_253.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_253.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5712.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5712.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_644.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_644.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_371.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_245.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_422.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_422.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_146.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_146.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_88.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_4.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_358.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_358.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_89.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_47.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_4.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5654.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5654.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_165.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1468.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1468.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_1030.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_1030.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_396.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_396.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6696.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6696.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_83.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_227.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_227.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1055.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1055.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2975.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2975.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3156.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3156.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_576.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_576.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_93.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_75.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_421.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_421.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_84.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_207.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_16.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_16.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_17.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_17.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_18.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_18.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_19.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_19.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_168.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_168.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_20.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_20.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_21.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_22.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_22.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_97.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_90.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_76.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2285.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2285.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2964.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2964.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1494.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1494.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1477.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1477.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_467.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_467.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_152.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1356.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1356.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_130.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_130.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_267.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_267.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_406.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_406.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_107.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_741.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_741.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_777.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_777.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_66.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_487.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_487.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_193.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_193.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_12.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_12.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_13.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_14.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_15.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_15.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_16.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_191.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_191.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_187.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_187.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_178.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_178.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_148.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_331.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_331.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_343.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_343.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_268.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_268.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_298.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_298.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_183.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_183.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_170.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_170.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_144.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_144.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_79.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_567.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_567.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_251.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_251.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_103.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3771.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3771.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_235.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_214.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_214.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF285-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF285.bestfold.profile.pattern_0.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF285/ZNF285-201-vs-ChipExo_models_ZNF285.bestfold.profile.pattern_0.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8325.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8325.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1608.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1608.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_758.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_758.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_254.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_254.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1145.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1145.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_123.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_1184.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_1184.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_580.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_580.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_217.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_217.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_182.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_182.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_116.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_113.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_81.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_432.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_432.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_6.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_5.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_789.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_789.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_457.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_457.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_361.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_361.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_73.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1858.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1858.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1238.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1238.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_573.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_573.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_104.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_104.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_162.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_162.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_11.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_12.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_129.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_77.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_59.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_72.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_71.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_410.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_410.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_34.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_925.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_925.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_82.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_313.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_731.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_731.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_68.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_148.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_8.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_7936.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_7936.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_690.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_690.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_364.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_364.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_125.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_67.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_3859.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_3859.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3506.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3506.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_626.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_626.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_74.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_2981.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_2981.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_176.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4518.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4518.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_411.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_411.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6037.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6037.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_490.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_490.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_386.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_386.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_219.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_219.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_180.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_152.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_152.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_94.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_51.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4055.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4055.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2368.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2368.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_1347.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_1347.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_319.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_319.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_163.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_163.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_46.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2327.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2327.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1763.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1763.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_70.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_65.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_26.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_211.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_211.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_190.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_190.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_2.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_835.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_835.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_156.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_38.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_8686.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_8686.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_5420.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_5420.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_442.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_442.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_280.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_280.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_245.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_245.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_234.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_234.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_179.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_179.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_117.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_85.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_85.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_62.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_55.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_54.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_48.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3238.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3238.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2591.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2591.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2515.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2515.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_1885.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_1885.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1109.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_365.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_365.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_61.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_158.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_158.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_97.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_97.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_78.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_121.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_43.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_98.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_98.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_41.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_6.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_7.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_167.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_167.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_156.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_156.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_101.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_96.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_80.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_57.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_115.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_108.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_64.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_44.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_36.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_6.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1112.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_69.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_53.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_534.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_534.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_266.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_266.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_27.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_195.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_195.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_33.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_11.n_30.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_12.n_25.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_13.n_23.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_14.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_114.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_63.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_52.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_49.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_42.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_39.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_37.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_35.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_58.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_4.n_20.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_2811.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_2811.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_962.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_962.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_708.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_708.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_286.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_45.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_95.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_60.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_181.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_137.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_86.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_40.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_24.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_8444.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_8444.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_205.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_205.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_22.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.PWM.trim_0.5 -bits -trimMOT2 0.5
 python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3405.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3405.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_710.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_710.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_10.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_11.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_155.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_155.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_105.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_552.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_552.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2583.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2583.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_310.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_310.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_177.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_177.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2585.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2585.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_326.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_326.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_172.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_172.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_123.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_930.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_930.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_578.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_578.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_217.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_217.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_2.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_3.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_4.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_1931.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_1931.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_266.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_678.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_678.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_2.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_286.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_3575.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_3575.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_727.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_727.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_3294.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_3294.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_1578.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_1578.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_1329.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_1329.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2868.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2868.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1726.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1726.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_383.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_383.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3903.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3903.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_1106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_1106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_415.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_415.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1781.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1781.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_812.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_812.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_196.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_196.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_186.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_164.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_164.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_143.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1406.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_315.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_315.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_386.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_386.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_399.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_399.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_193.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_128.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_10.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_215.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_215.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF454.bestfold.profile.pattern_0.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_GR_models_ZNF454.bestfold.profile.pattern_0.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_887.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_887.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_614.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_614.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_637.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_637.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_5.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_6.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_7.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_978.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_978.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_834.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_834.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF513/ZNF513-201-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF513/ZNF513-202-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_377.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_377.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_185.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_185.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_126.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_126.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_679.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_679.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_255.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_255.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_5.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_194.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_194.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_191.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_191.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_287.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_287.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_1771.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_1771.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1669.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1669.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_324.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_207.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_207.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2056.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2056.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_174.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_174.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_164.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_164.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5545.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5545.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_745.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_745.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_600.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_600.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_238.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_238.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_213.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_213.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_185.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_185.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_184.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_184.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_116.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_964.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_964.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_10.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_11.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_12.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_13.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_502.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_502.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_9.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4718.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4718.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_315.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_315.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_210.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_210.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_178.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_178.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_120.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_120.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_702.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_702.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_805.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_805.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_306.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_306.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_198.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_198.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_153.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_153.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_116.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_144.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_154.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_154.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_5.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4076.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4076.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_172.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_172.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_154.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_154.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_519.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_519.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_435.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_435.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_4.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_5.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_7.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_971.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_971.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_728.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_728.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_580.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_580.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_514.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_514.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_366.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_366.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_155.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_155.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_126.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_387.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_387.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6717.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6717.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_346.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_346.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_100.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_251.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_251.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1338.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1338.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_205.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_205.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_293.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_293.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_834.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_834.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2409.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2409.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_162.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_5.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_815.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_815.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_700.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_700.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_6.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_523.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_523.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_237.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_169.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_169.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1245.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1245.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_10.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2766.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2766.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_272.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_272.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_159.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_159.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_150.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_150.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_215.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_215.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_209.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_209.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_163.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_163.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1363.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1363.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_936.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_936.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_473.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_473.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_231.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1324.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1324.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1526.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1526.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1517.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1517.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5533.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5533.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1736.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1736.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_962.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_962.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_594.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_594.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_203.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_203.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_188.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_188.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_92.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF705G.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_1.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_199.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_199.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_130.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_130.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_338.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_338.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_297.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_297.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_27.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_27.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_28.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_28.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_253.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_253.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_205.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_205.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_0.n_122.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_0.n_122.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_1.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_2.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_2.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_3.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_4.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_5.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_585.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_585.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1350.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1350.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1323.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1323.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_1192.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_1192.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_100.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_599.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_599.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1018.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1018.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_291.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_291.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_92.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_8.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_9.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1827.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1827.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1722.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1722.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3261.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3261.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_105.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_8999.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_8999.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_323.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_323.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_185.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_185.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_226.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_226.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2020.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2020.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_10.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_10.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_11.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_11.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_785.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_785.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_612.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_612.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_466.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_466.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_406.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_284.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_284.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_242.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_242.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_179.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_179.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_154.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4274.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4274.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_291.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_291.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_176.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_176.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_9421.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_9421.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_367.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_367.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_315.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_315.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_296.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_296.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_275.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_275.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_145.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_6199.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_6199.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3396.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3396.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_227.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_227.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_241.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_241.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_6.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_7.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_220.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_220.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_158.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_158.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_3.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7682.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7682.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_235.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_878.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_878.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_761.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_761.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_527.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_527.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_461.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_461.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_371.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_931.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_931.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_134.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1036.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1036.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2440.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2440.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_357.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_357.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_273.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_273.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_818.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_818.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_1.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_11267.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_11267.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_320.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_320.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_1020.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_1020.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4522.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4522.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_219.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3475.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF436/ZNF436-201-vs-Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3475.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_788.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_788.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_6.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_7.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_904.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_904.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_270.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_270.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_260.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1454.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1454.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_635.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_635.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_172.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_172.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_87.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_146.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_146.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_133.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_133.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_85.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1754.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1754.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1079.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1079.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4449.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4449.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_326.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_326.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_173.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_153.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_153.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_831.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_831.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_387.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_387.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_1685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_1685.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_1175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_1175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_441.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_441.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_428.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_428.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_314.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_314.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_465.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_465.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_843.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_843.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF570.bestfold.profile.pattern_0.n_177.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF570/ZNF570-201-vs-ChipExo_models_ZNF570.bestfold.profile.pattern_0.n_177.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF570.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF570/ZNF570-201-vs-ChipExo_models_ZNF570.bestfold.profile.pattern_1.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_245.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_178.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_178.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1393.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1393.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1481.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1481.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_1224.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_1224.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_969.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_969.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_348.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_348.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_1016.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_1016.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_761.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_761.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_484.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_484.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_363.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_363.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_214.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_214.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_2907.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_2907.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2525.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2525.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1340.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1340.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_973.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_973.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_4.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_5.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4209.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4209.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_1769.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_1769.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1304.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1304.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_319.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_319.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_465.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_465.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_187.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_187.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_6.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_7.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_800.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_800.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8660.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8660.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_11.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_775.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_775.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_627.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_627.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_228.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_228.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_158.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_971.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_971.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_92.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1077.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1077.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_850.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_850.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_753.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_753.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_727.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_727.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_445.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_445.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_5.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_5.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_6.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_7.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4926.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4926.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_968.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_968.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_541.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_541.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_336.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_336.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_147.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_147.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_110.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_5990.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_5990.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_2.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_2.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_3.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_4.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_5.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_6.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1616.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1616.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_1059.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_1059.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_710.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_273.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_273.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_220.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_220.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_154.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_154.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_575.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_575.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_409.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_409.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_4.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_5.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_135.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_506.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_506.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3380.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3380.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_2050.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_2050.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_3983.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_3983.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_276.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_276.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_202.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_479.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_479.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_384.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_384.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_340.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_340.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_286.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_149.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_116.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_180.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_234.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_10.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_11.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_12.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_13.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_14.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_15.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_6.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_7.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_8.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_9.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_131.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_131.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2300.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2300.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2010.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2010.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1817.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1817.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_704.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_704.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_641.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_641.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_536.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_536.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_494.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_494.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_254.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_254.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_196.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_196.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_728.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_728.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_119.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_2.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_274.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_274.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_118.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_492.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_492.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_360.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_360.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_3.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_413.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_413.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4477.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4477.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_459.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_459.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3663.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3663.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_236.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_236.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1232.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1232.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6028.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6028.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_3.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4095.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4095.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_128.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_3.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_3723.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_3723.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2873.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2873.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_399.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_399.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_231.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_231.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1446.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_853.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_853.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_740.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_740.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_261.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_261.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1499.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1499.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_565.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_565.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_399.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_399.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_291.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_278.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_278.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_256.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8879.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8879.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_520.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_520.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_193.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1690.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1690.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_870.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_870.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_258.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_258.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_247.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_247.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_56.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_5.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_6.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_7.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_8.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_253.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_253.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5712.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5712.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_644.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_644.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_371.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_245.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_245.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_189.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_422.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_422.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_146.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_146.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_88.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_4.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_358.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_358.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_89.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_47.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_180.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_4.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5654.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5654.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_165.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1468.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1468.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_1030.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_1030.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_396.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_396.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6696.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6696.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_83.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_227.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_227.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1055.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1055.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2975.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2975.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_4.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3156.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3156.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_576.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_576.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_93.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_75.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_421.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_421.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_84.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_207.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_16.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_16.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_17.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_17.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_18.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_18.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_19.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_19.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_168.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_168.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_20.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_20.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_21.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_22.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_22.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_97.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_90.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_76.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2285.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2285.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2964.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2964.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1494.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1494.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1477.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1477.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_467.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_467.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_152.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1356.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1356.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_130.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_130.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_267.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_267.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_406.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_406.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_107.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_741.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_741.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_777.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_777.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_66.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_487.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_487.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_193.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_193.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_12.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_12.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_13.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_14.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_15.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_15.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_16.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_191.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_191.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_187.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_187.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_178.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_178.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_148.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_331.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_331.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_343.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_343.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_268.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_268.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_298.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_298.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_286.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_183.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_183.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_170.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_170.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_144.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_144.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_79.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_567.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_567.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_251.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_251.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_103.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3771.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3771.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_235.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_214.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_214.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF285-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF285.bestfold.profile.pattern_0.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF285/ZNF285-201-vs-ChipExo_models_ZNF285.bestfold.profile.pattern_0.n_166.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8325.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8325.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1608.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1608.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_758.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_758.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_254.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_254.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1145.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1145.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_123.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_1184.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_1184.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_580.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_580.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_286.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_217.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_217.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_182.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_182.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_116.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_113.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_81.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_432.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_432.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_6.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_7.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_5.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_789.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_789.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_457.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_457.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_361.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_361.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_73.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1858.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1858.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1238.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1238.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_573.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_573.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_104.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_104.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_162.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_162.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_11.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_12.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_129.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_77.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_59.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_72.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_71.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_410.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_410.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_34.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_925.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_925.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_82.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_313.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_731.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_731.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_68.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_180.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_148.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_8.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_7936.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_7936.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_690.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_690.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_364.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_364.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_125.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_67.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_180.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_3859.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_3859.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3506.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3506.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_626.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_626.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_74.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_2981.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_2981.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_176.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4518.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4518.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_411.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_411.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6037.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6037.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_490.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_490.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_386.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_386.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_219.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_219.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_180.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_152.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_152.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_94.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_51.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4055.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4055.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2368.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2368.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_1347.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_1347.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_319.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_319.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_163.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_163.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_46.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2327.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2327.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1763.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1763.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_70.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_65.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_26.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_211.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_211.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_190.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_190.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_2.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_835.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_835.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_156.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_156.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_38.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_8686.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_8686.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_5420.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_5420.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_442.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_442.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_280.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_280.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_245.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_245.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_234.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_234.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_179.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_179.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_117.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_85.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_85.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_62.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_55.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_54.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_48.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3238.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3238.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2591.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2591.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2515.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2515.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_1885.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_1885.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1109.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_365.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_365.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_61.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_158.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_158.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_97.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_97.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_78.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_121.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_43.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_98.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_98.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_41.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_5.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_6.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_7.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_167.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_167.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_156.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_156.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_101.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_96.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_80.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_57.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_115.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_108.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_64.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_44.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_36.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_6.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1112.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_69.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_53.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_534.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_534.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_266.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_266.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_27.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_195.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_195.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_33.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_11.n_30.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_12.n_25.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_13.n_23.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_14.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_114.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_63.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_52.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_49.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_42.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_39.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_37.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_35.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_58.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_4.n_20.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_2811.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_2811.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_962.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_962.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_708.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_708.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_286.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_45.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_95.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_60.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_181.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_137.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_86.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_40.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_24.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_8444.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_8444.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_205.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_205.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_22.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.PWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3405.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3405.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_710.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_10.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_11.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_11.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_155.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_105.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_552.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_552.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2583.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2583.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_310.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_310.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_177.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2585.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2585.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_326.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_172.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_123.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_930.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_930.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_578.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_217.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_2.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_4.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_1931.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_1931.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_266.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_678.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_678.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_2.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_3575.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_3575.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_727.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_727.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_3294.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_3294.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_1578.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_1578.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_1329.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_1329.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2868.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2868.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1726.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1726.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_383.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_383.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3903.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3903.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_1106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_1106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_415.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_415.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1781.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1781.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_812.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_812.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_196.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_186.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_164.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_143.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_143.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_85.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1406.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_315.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_386.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_399.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_193.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_128.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_215.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF454.bestfold.profile.pattern_0.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_GR_models_ZNF454.bestfold.profile.pattern_0.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_887.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_887.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_614.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_614.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_637.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_637.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_92.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_6.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_978.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_978.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_834.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_834.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF513/ZNF513-201-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF513/ZNF513-202-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_377.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_377.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_185.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_126.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_679.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_679.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_255.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_255.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_5.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_194.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_194.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_191.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_287.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_287.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_122.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_1771.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_1771.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1669.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1669.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_324.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_207.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2056.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2056.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_174.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_174.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_164.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_164.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5545.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5545.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_105.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_104.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_745.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_745.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_600.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_600.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_238.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_213.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_213.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_185.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_184.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_116.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_964.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_964.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_10.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_10.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_11.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_11.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_12.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_12.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_502.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_502.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_9.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_9.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4718.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4718.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_315.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_210.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_178.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_120.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_120.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_702.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_702.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_805.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_805.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_306.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_306.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_198.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_198.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_153.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_116.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_144.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_154.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4076.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4076.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_172.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_154.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_519.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_519.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_435.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_435.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_4.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_4.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_971.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_971.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_728.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_728.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_580.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_580.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_514.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_514.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_366.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_366.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_155.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_126.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_126.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_387.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6717.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6717.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_346.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_346.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_100.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_251.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1338.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_205.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_88.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_293.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_293.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_834.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_834.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2409.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_162.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_815.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_815.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_700.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_700.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_6.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_523.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_523.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_237.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_237.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_169.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_169.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1245.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2766.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2766.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_272.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_272.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_159.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_150.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_150.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_215.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_215.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_209.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_163.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1363.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_936.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_936.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_473.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_473.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_231.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1324.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1324.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1526.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1526.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1517.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1517.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5533.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5533.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1736.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1736.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_962.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_962.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_594.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_594.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_203.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_203.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_188.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_188.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_92.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF705G.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_199.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_130.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_338.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_338.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_297.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_297.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_27.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_27.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_28.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_28.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_253.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_205.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_104.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_100.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_0.n_122.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_0.n_122.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_1.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_2.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_2.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_3.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_4.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_4.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_585.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_585.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1350.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1350.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1323.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1323.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_1192.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_1192.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_133.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_100.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_100.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_599.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_599.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1018.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1018.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_291.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_92.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_8.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1827.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1827.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1722.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1722.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3261.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_105.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_105.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_8999.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_8999.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_323.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_323.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_185.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_185.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_226.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_226.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2020.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2020.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_10.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_10.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_11.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_11.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_785.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_785.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_612.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_612.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_466.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_466.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_406.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_284.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_284.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_242.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_242.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_179.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_154.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4274.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_291.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_176.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_9421.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_9421.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_367.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_367.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_315.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_315.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_296.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_296.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_275.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_275.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_145.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_6199.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_6199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3396.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3396.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_227.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_241.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_241.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_6.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_7.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_7.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_220.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_158.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7682.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7682.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_878.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_878.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_761.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_761.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_527.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_527.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_461.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_461.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_371.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_931.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_931.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_134.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_134.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1036.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1036.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2440.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2440.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_357.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_357.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_273.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_818.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_818.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_1.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_11267.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_11267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_320.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_320.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_1020.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_1020.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4522.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4522.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_219.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3475.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF436/ZNF436-201-vs-Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3475.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_788.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_788.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_6.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_904.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_904.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_270.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_270.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_88.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1454.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1454.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_635.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_635.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_172.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_172.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_87.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_87.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_146.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_133.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_133.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_85.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1754.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1754.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1079.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1079.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4449.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4449.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_326.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_326.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_173.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_173.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_153.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_153.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_831.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_831.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_387.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_387.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_1685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_1685.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_1175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_1175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_441.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_441.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_428.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_428.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_314.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_314.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_465.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_465.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_843.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_843.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF570.bestfold.profile.pattern_0.n_177.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF570/ZNF570-201-vs-ChipExo_models_ZNF570.bestfold.profile.pattern_0.n_177.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF570.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF570/ZNF570-201-vs-ChipExo_models_ZNF570.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_245.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_178.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1393.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1393.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1481.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1481.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_1224.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_1224.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_969.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_969.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_348.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_348.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_1016.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_1016.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_761.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_761.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_484.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_484.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_363.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_363.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_214.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_123.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_2907.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_2907.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2525.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2525.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1340.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_973.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_973.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_4.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_5.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_5.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4209.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4209.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_1769.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_1769.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1304.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1304.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_319.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_465.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_465.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_187.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_6.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_7.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_800.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_800.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_131.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8660.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8660.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_11.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_11.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_775.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_775.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_627.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_627.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_228.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_228.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_158.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_971.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_971.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_92.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_92.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1077.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1077.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_850.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_850.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_753.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_753.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_727.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_727.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_445.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_445.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_5.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_5.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_6.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_6.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_7.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_7.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4926.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4926.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_968.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_968.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_541.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_541.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_336.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_336.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_147.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_147.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_110.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_5990.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_5990.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_2.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_2.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_3.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_3.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_4.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_4.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_5.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_5.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_6.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_6.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1616.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1616.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_1059.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_1059.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_710.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_710.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_273.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_273.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_220.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_220.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_154.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_154.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_575.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_575.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_409.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_409.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_4.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_4.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_5.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_5.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_135.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_135.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_506.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_506.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3380.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3380.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_2050.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_2050.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_3983.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_3983.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_276.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_276.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_202.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_202.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_479.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_479.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_384.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_384.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_340.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_340.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_149.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_149.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_116.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_234.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_10.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_11.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_11.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_13.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_13.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_15.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_15.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_6.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_6.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_7.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_7.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_8.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_9.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_9.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_131.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_131.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2300.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2300.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2010.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2010.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1817.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1817.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_704.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_704.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_641.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_641.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_536.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_536.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_494.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_494.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_254.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_196.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_196.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_98.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_728.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_728.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_119.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_119.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_2.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_2.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_274.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_274.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_118.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_118.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_492.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_492.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_360.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_360.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_413.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_413.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4477.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4477.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_459.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_459.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3663.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3663.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_236.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_236.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1232.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1232.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6028.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6028.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_3.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4095.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4095.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_128.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_3.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_3.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_3723.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_3723.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2873.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2873.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_399.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_231.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_231.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_853.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_853.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_740.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_740.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_261.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_261.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1499.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1499.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_565.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_565.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_399.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_399.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_291.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_291.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_278.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_278.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_256.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_256.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8879.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8879.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_520.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_520.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_193.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1690.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1690.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_870.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_870.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_258.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_258.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_247.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_247.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_56.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_56.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_5.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_5.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_6.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_6.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_7.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_7.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_8.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_8.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_253.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_253.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5712.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5712.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_644.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_644.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_371.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_371.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_245.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_422.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_422.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_146.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_146.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_88.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_88.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_4.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_4.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_358.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_358.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_89.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_89.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_47.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_47.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_4.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_4.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5654.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5654.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_165.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_165.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1468.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1468.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_1030.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_1030.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_396.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_396.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6696.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6696.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_83.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_83.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_227.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_227.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1055.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1055.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2975.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2975.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3156.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_576.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_576.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_93.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_93.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_75.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_75.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_421.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_421.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_84.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_84.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_207.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_207.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_16.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_16.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_17.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_17.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_18.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_18.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_19.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_19.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_168.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_168.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_20.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_20.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_21.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_21.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_22.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_22.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_97.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_90.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_90.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_76.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_76.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2285.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2285.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2964.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2964.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1494.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1494.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1477.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1477.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_467.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_467.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_152.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1356.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1356.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_130.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_130.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_267.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_267.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_406.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_406.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_107.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_107.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_741.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_741.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_777.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_777.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_66.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_66.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_487.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_487.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_193.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_193.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_12.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_12.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_13.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_13.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_14.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_14.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_15.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_15.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_16.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_16.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_191.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_191.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_187.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_187.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_178.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_178.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_148.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_331.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_331.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_343.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_343.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_268.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_268.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_298.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_298.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_183.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_183.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_170.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_170.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_144.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_144.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_94.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_79.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_79.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_567.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_567.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_251.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_251.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_103.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_103.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3771.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3771.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_235.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_235.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_214.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_214.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF285-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF285.bestfold.profile.pattern_0.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF285/ZNF285-201-vs-ChipExo_models_ZNF285.bestfold.profile.pattern_0.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8325.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8325.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1608.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1608.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_758.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_758.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_254.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_254.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1145.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1145.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_123.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_123.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_1184.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_1184.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_580.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_580.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_217.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_217.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_182.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_182.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_116.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_116.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_113.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_113.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_81.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_81.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_432.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_432.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_6.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_6.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_5.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_5.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_789.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_789.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_457.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_457.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_361.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_361.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_73.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_73.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1858.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1858.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1238.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_573.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_573.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_104.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_104.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_162.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_162.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_11.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_11.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_12.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_12.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_129.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_129.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_77.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_77.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_59.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_59.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_72.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_72.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_71.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_71.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_410.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_410.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_34.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_34.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_925.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_925.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_82.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_82.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_313.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_313.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_731.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_731.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_68.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_68.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_148.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_148.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_8.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_8.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_7936.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_7936.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_690.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_690.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_364.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_364.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_125.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_125.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_67.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_67.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_3859.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_3859.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3506.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3506.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_626.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_626.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_74.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_74.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_2981.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_2981.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_176.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_176.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4518.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4518.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_411.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_411.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6037.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6037.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_490.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_490.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_386.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_386.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_219.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_219.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_180.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_180.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_152.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_152.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_94.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_94.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_51.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_51.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4055.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4055.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2368.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2368.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_1347.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_1347.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_319.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_319.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_163.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_163.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_46.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_46.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2327.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2327.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1763.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1763.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_70.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_70.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_65.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_65.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_26.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_26.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_211.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_211.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_190.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_190.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_2.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_2.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_835.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_835.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_156.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_38.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_38.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_8686.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_8686.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_5420.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_5420.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_442.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_442.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_280.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_280.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_245.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_245.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_234.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_234.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_179.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_179.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_117.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_117.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_85.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_85.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_62.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_62.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_55.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_55.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_54.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_54.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_48.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_48.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3238.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3238.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2591.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2591.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2515.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2515.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_1885.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_1885.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1109.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1109.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_365.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_365.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_61.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_61.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_158.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_158.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_97.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_97.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_78.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_78.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_121.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_121.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_43.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_43.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_98.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_98.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_41.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_41.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_6.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_6.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_7.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_7.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_167.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_167.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_156.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_156.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_101.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_101.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_96.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_96.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_80.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_80.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_57.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_57.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_115.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_115.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_108.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_108.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_64.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_64.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_44.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_44.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_36.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_36.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_6.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_6.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1112.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1112.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_69.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_69.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_53.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_53.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_534.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_534.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_266.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_266.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_27.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_27.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_195.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_195.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_33.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_33.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_11.n_30.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_11.n_30.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_12.n_25.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_12.n_25.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_13.n_23.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_13.n_23.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_14.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_14.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_114.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_114.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_63.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_63.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_52.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_52.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_49.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_49.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_42.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_42.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_39.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_39.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_37.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_37.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_35.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_35.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_58.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_58.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_4.n_20.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_4.n_20.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_2811.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_2811.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_962.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_962.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_708.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_708.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_286.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_286.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_45.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_45.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_95.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_95.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_60.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_60.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_181.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_181.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_137.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_137.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_86.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_86.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_40.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_40.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_24.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_24.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_8444.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_8444.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_205.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_205.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_22.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_22.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.PWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.PWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3405.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3405.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_710.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_10.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_11.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_155.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_105.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_552.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_552.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2583.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2583.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_310.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_310.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_177.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2585.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2585.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_326.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_172.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_123.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_930.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_930.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_578.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_578.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_217.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_2.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_4.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_1931.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_1931.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_266.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_678.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_678.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_2.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_3575.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_3575.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_727.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_727.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_3294.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_3294.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_1578.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_1578.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_1329.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_1329.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2868.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2868.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1726.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1726.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_383.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_383.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3903.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3903.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_1106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_1106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_415.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_415.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1781.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1781.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_812.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_812.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_196.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_164.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_143.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1406.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1406.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_315.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_386.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_399.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_193.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_128.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_215.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF454.bestfold.profile.pattern_0.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_GR_models_ZNF454.bestfold.profile.pattern_0.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_887.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_887.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_614.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_614.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_637.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_637.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_6.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_978.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_978.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_834.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_834.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF513/ZNF513-201-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF513/ZNF513-202-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_377.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_377.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_185.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_126.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_679.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_679.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_255.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_255.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_5.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_194.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_194.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_191.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_287.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_287.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_1771.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_1771.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1669.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1669.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_324.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_207.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2056.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2056.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_174.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_174.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_164.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_164.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5545.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5545.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_745.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_745.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_600.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_600.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_238.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_238.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_213.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_213.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_185.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_184.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_184.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_116.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_964.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_964.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_10.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_11.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_12.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_502.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_502.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_9.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4718.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4718.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_315.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_210.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_178.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_120.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_120.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_702.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_702.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6113.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_805.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_805.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_306.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_306.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_198.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_198.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_153.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_116.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_144.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_154.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4076.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4076.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_172.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_154.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_519.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_519.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_435.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_435.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_4.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_971.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_971.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_728.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_728.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_580.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_580.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_514.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_514.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_366.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_366.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_155.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_126.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_387.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6717.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6717.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_346.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_346.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_100.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_251.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1338.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1338.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_205.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_293.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_293.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_834.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_834.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2409.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2409.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_162.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_815.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_815.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_700.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_700.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_523.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_523.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_237.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_169.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_169.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1245.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1245.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2766.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2766.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_272.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_272.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_159.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_159.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_150.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_150.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_215.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_215.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_209.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_209.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_163.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1363.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1363.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_936.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_936.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_473.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_473.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_231.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1324.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1324.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1526.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1526.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1517.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1517.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5533.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5533.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1736.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1736.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_962.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_962.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_594.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_594.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_203.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_203.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_188.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_188.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_92.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF705G.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_199.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_130.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_338.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_338.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_297.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_297.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_27.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_27.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_28.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_28.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_253.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_205.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_0.n_122.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_0.n_122.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_1.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_2.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_2.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_3.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_4.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_585.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_585.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1350.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1350.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1323.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1323.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_1192.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_1192.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_100.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_599.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_599.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1018.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1018.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_291.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_92.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1827.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1827.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1722.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1722.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3261.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3261.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_105.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_8999.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_8999.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_323.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_323.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_185.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_185.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_226.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_226.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2020.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2020.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_10.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_10.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_11.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_11.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_785.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_785.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_612.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_612.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_466.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_466.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_406.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_284.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_284.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_242.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_242.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_179.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4274.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4274.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_291.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_176.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_9421.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_9421.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1113.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_367.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_367.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_315.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_315.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_296.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_296.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_275.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_275.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_145.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_6199.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_6199.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3396.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3396.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_227.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_241.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_241.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_6.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_7.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_220.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_158.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7682.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7682.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_878.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_878.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_761.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_761.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_527.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_527.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_461.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_461.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_931.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_931.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_134.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1036.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1036.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2440.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2440.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_357.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_357.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_273.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_818.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_818.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_1.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_11267.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_11267.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_320.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_320.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_1020.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_1020.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4522.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4522.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_219.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3475.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF436/ZNF436-201-vs-Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3475.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_788.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_788.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_6.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_904.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_904.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_270.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_270.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1454.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1454.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_635.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_635.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_172.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_172.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_87.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_146.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_133.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_133.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_85.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1754.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1754.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1079.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1079.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4449.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4449.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_326.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_326.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_173.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_153.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_153.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_831.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_831.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_387.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_387.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_1685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_1685.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_1175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_1175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_441.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_441.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_428.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_428.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_314.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_314.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_465.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_465.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_843.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_843.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF570.bestfold.profile.pattern_0.n_177.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF570/ZNF570-201-vs-ChipExo_models_ZNF570.bestfold.profile.pattern_0.n_177.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF570.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF570/ZNF570-201-vs-ChipExo_models_ZNF570.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_178.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1393.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1393.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1481.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1481.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_1224.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_1224.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_969.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_969.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_348.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_348.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_1016.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_1016.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_761.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_761.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_484.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_484.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_363.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_363.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_214.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_2907.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_2907.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2525.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2525.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1340.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1340.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_973.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_973.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_4.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_5.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4209.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4209.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_1769.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_1769.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1304.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1304.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_319.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_465.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_465.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_187.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_6.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_7.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_800.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_800.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8660.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8660.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_11.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_775.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_775.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_627.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_627.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_228.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_228.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_971.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_971.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_92.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1077.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1077.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_850.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_850.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_753.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_753.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_727.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_727.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_445.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_445.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_5.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_5.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_6.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_7.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4926.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4926.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_968.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_968.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_541.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_541.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_336.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_336.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_147.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_147.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_110.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_5990.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_5990.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_2.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_2.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_3.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_4.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_5.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_6.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1616.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1616.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_1059.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_1059.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_710.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_273.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_273.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_220.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_220.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_154.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_154.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_575.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_575.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_409.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_409.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_4.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_5.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_135.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_506.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_506.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3380.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3380.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_2050.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_2050.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_3983.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_3983.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_276.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_276.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_202.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_479.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_479.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_384.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_384.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_340.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_340.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_149.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_116.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_10.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_11.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_13.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_15.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_6.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_7.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_8.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_9.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_131.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_131.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2300.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2300.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2010.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2010.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1817.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1817.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_704.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_704.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_641.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_641.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_536.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_536.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_494.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_494.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_254.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_196.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_196.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_728.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_728.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_119.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_2.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_274.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_274.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_118.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_492.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_492.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_360.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_360.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_413.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_413.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4477.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4477.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_459.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_459.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3663.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3663.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_236.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_236.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1232.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1232.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6028.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6028.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_3.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4095.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4095.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_128.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_3.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_3723.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_3723.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2873.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2873.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_399.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_231.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_231.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1446.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_853.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_853.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_740.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_740.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_261.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_261.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1499.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1499.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_565.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_565.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_399.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_399.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_291.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_278.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_278.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_256.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8879.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8879.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_520.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_520.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_193.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1690.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1690.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_870.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_870.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_258.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_258.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_247.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_247.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_56.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_5.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_6.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_7.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_8.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_253.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_253.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5712.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5712.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_644.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_644.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_371.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_245.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_422.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_422.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_146.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_146.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_88.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_4.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_358.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_358.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_89.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_47.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_4.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5654.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5654.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_165.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1468.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1468.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_1030.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_1030.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_396.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_396.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6696.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6696.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_83.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_227.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_227.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1055.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1055.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2975.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2975.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3156.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3156.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_576.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_576.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_93.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_75.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_421.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_421.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_84.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_207.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_16.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_16.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_17.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_17.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_18.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_18.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_19.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_19.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_168.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_168.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_20.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_20.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_21.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_22.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_22.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_97.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_90.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_76.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2285.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2285.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2964.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2964.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1494.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1494.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1477.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1477.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_467.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_467.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_152.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1356.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1356.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_130.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_130.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_267.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_267.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_406.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_406.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_107.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_741.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_741.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_777.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_777.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_66.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_487.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_487.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_193.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_193.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_12.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_12.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_13.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_14.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_15.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_15.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_16.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_191.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_191.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_187.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_187.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_178.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_178.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_148.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_331.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_331.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_343.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_343.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_268.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_268.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_298.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_298.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_183.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_183.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_170.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_170.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_144.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_144.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_79.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_567.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_567.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_251.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_251.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_103.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3771.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3771.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_235.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_214.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_214.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF285-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF285.bestfold.profile.pattern_0.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF285/ZNF285-201-vs-ChipExo_models_ZNF285.bestfold.profile.pattern_0.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8325.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8325.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1608.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1608.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_758.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_758.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_254.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_254.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1145.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1145.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_123.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_1184.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_1184.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_580.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_580.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_217.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_217.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_182.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_182.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_116.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_113.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_81.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_432.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_432.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_6.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_5.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_789.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_789.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_457.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_457.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_361.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_361.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_73.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1858.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1858.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1238.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1238.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_573.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_573.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_104.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_104.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_162.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_162.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_11.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_12.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_129.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_77.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_59.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_72.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_71.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_410.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_410.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_34.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_925.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_925.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_82.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_313.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_731.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_731.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_68.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_148.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_8.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_7936.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_7936.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_690.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_690.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_364.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_364.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_125.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_67.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_3859.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_3859.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3506.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3506.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_626.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_626.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_74.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_2981.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_2981.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_176.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4518.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4518.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_411.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_411.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6037.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6037.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_490.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_490.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_386.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_386.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_219.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_219.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_180.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_152.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_152.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_94.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_51.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4055.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4055.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2368.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2368.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_1347.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_1347.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_319.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_319.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_163.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_163.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_46.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2327.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2327.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1763.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1763.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_70.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_65.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_26.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_211.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_211.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_190.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_190.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_2.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_835.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_835.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_156.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_38.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_8686.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_8686.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_5420.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_5420.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_442.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_442.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_280.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_280.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_245.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_245.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_234.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_234.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_179.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_179.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_117.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_85.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_85.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_62.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_55.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_54.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_48.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3238.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3238.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2591.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2591.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2515.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2515.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_1885.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_1885.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1109.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_365.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_365.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_61.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_158.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_158.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_97.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_97.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_78.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_121.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_43.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_98.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_98.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_41.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_6.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_7.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_167.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_167.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_156.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_156.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_101.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_96.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_80.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_57.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_115.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_108.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_64.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_44.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_36.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_6.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1112.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_69.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_53.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_534.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_534.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_266.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_266.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_27.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_195.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_195.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_33.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_11.n_30.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_12.n_25.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_13.n_23.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_14.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_114.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_63.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_52.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_49.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_42.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_39.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_37.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_35.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_58.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_4.n_20.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_2811.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_2811.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_962.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_962.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_708.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_708.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_286.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_45.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_95.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_60.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_181.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_137.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_86.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_40.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_24.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_8444.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_8444.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_205.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_205.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_22.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.CWM.trim_0.5 -bits -trimMOT2 0.5
 python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3405.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3405.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_710.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_710.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_10.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_11.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_155.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_155.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_105.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_552.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_552.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2583.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2583.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_310.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_310.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_177.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_177.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2585.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2585.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_326.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_326.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_172.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_172.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_123.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_930.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_930.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_578.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_578.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_217.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_217.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_2.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_3.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_4.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_1931.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_1931.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_266.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_678.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_678.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_2.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_286.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_3575.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_3575.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_727.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_727.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_3294.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_3294.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_1578.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_1578.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_1329.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_1329.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2868.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2868.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1726.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1726.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_383.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_383.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3903.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3903.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_1106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_1106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_415.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_415.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1781.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1781.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_812.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_812.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_196.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_196.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_186.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_164.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_164.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_143.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1406.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_315.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_315.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_386.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_386.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_399.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_399.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_193.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_128.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_10.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_215.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_215.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF454.bestfold.profile.pattern_0.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_GR_models_ZNF454.bestfold.profile.pattern_0.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_887.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_887.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_614.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_614.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_637.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_637.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_5.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_6.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_7.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_978.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_978.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_834.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_834.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF513/ZNF513-201-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF513/ZNF513-202-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_377.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_377.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_185.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_185.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_126.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_126.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_679.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_679.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_255.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_255.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_5.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_194.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_194.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_191.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_191.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_287.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_287.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_1771.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_1771.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1669.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1669.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_324.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_207.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_207.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2056.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2056.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_174.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_174.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_164.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_164.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5545.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5545.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_745.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_745.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_600.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_600.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_238.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_238.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_213.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_213.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_185.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_185.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_184.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_184.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_116.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_964.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_964.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_10.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_11.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_12.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_13.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_502.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_502.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_9.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4718.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4718.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_315.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_315.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_210.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_210.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_178.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_178.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_120.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_120.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_702.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_702.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_805.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_805.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_306.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_306.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_198.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_198.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_153.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_153.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_116.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_144.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_154.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_154.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_5.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4076.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4076.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_172.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_172.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_154.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_154.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_519.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_519.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_435.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_435.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_4.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_5.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_7.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_971.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_971.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_728.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_728.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_580.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_580.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_514.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_514.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_366.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_366.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_155.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_155.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_126.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_387.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_387.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6717.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6717.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_346.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_346.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_100.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_251.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_251.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1338.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1338.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_205.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_205.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_293.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_293.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_834.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_834.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2409.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2409.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_162.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_5.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_815.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_815.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_700.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_700.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_6.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_523.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_523.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_237.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_169.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_169.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1245.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1245.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_10.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2766.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2766.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_272.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_272.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_159.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_159.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_150.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_150.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_215.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_215.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_209.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_209.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_163.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_163.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1363.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1363.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_936.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_936.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_473.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_473.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_231.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1324.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1324.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1526.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1526.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1517.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1517.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5533.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5533.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1736.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1736.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_962.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_962.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_594.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_594.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_203.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_203.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_188.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_188.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_92.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF705G.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_1.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_199.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_199.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_130.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_130.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_338.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_338.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_297.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_297.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_27.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_27.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_28.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_28.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_253.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_253.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_205.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_205.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_0.n_122.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_0.n_122.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_1.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_2.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_2.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_3.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_4.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_5.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_585.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_585.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1350.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1350.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1323.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1323.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_1192.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_1192.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_100.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_599.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_599.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1018.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1018.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_291.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_291.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_92.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_8.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_9.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1827.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1827.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1722.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1722.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3261.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3261.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_105.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_8999.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_8999.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_323.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_323.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_185.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_185.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_226.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_226.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2020.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2020.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_10.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_10.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_11.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_11.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_785.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_785.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_612.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_612.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_466.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_466.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_406.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_284.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_284.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_242.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_242.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_179.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_179.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_154.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4274.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4274.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_291.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_291.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_176.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_176.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_9421.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_9421.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_367.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_367.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_315.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_315.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_296.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_296.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_275.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_275.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_145.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_6199.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_6199.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3396.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3396.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_227.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_227.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_241.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_241.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_6.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_7.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_220.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_220.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_158.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_158.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_3.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7682.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7682.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_235.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_878.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_878.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_761.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_761.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_527.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_527.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_461.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_461.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_371.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_931.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_931.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_134.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1036.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1036.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2440.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2440.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_357.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_357.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_273.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_273.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_818.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_818.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_1.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_11267.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_11267.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_320.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_320.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_1020.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_1020.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4522.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4522.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_219.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3475.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF436/ZNF436-201-vs-Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3475.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_788.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_788.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_6.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_7.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_904.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_904.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_270.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_270.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_260.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1454.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1454.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_635.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_635.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_172.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_172.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_87.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_146.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_146.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_133.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_133.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_85.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1754.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1754.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1079.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1079.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4449.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4449.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_326.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_326.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_173.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_153.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_153.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_831.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_831.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_387.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_387.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_1685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_1685.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_1175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_1175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_441.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_441.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_428.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_428.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_314.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_314.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_465.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_465.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_843.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_843.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF570.bestfold.profile.pattern_0.n_177.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF570/ZNF570-201-vs-ChipExo_models_ZNF570.bestfold.profile.pattern_0.n_177.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF570.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF570/ZNF570-201-vs-ChipExo_models_ZNF570.bestfold.profile.pattern_1.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_245.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_178.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_178.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1393.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1393.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1481.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1481.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_1224.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_1224.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_969.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_969.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_348.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_348.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_1016.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_1016.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_761.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_761.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_484.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_484.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_363.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_363.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_214.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_214.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_2907.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_2907.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2525.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2525.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1340.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1340.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_973.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_973.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_4.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_5.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4209.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4209.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_1769.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_1769.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1304.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1304.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_319.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_319.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_465.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_465.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_187.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_187.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_6.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_7.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_800.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_800.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8660.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8660.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_11.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_775.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_775.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_627.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_627.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_228.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_228.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_158.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_971.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_971.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_92.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1077.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1077.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_850.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_850.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_753.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_753.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_727.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_727.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_445.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_445.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_5.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_5.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_6.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_7.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4926.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4926.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_968.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_968.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_541.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_541.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_336.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_336.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_147.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_147.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_110.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_5990.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_5990.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_2.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_2.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_3.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_4.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_5.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_6.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1616.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1616.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_1059.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_1059.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_710.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_273.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_273.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_220.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_220.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_154.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_154.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_575.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_575.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_409.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_409.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_4.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_5.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_135.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_506.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_506.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3380.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3380.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_2050.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_2050.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_3983.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_3983.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_276.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_276.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_202.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_479.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_479.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_384.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_384.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_340.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_340.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_286.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_149.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_116.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_180.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_234.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_10.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_11.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_12.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_13.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_14.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_15.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_6.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_7.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_8.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_9.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_131.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_131.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2300.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2300.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2010.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2010.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1817.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1817.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_704.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_704.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_641.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_641.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_536.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_536.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_494.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_494.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_254.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_254.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_196.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_196.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_728.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_728.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_119.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_2.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_274.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_274.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_118.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_492.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_492.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_360.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_360.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_3.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_413.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_413.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4477.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4477.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_459.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_459.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3663.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3663.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_236.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_236.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1232.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1232.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6028.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6028.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_3.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4095.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4095.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_128.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_3.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_3723.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_3723.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2873.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2873.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_399.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_399.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_231.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_231.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1446.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_853.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_853.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_740.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_740.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_261.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_261.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1499.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1499.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_565.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_565.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_399.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_399.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_291.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_278.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_278.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_256.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8879.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8879.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_520.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_520.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_193.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1690.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1690.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_870.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_870.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_258.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_258.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_247.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_247.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_56.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_5.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_6.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_7.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_8.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_253.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_253.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5712.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5712.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_644.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_644.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_371.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_245.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_245.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_189.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_422.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_422.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_146.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_146.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_88.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_4.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_358.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_358.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_89.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_47.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_180.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_4.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5654.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5654.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_165.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1468.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1468.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_1030.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_1030.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_396.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_396.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6696.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6696.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_83.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_227.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_227.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1055.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1055.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2975.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2975.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_4.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3156.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3156.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_576.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_576.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_93.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_75.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_421.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_421.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_84.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_207.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_16.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_16.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_17.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_17.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_18.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_18.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_19.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_19.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_168.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_168.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_20.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_20.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_21.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_22.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_22.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_97.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_90.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_76.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2285.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2285.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2964.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2964.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1494.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1494.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1477.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1477.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_467.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_467.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_152.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1356.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1356.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_130.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_130.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_267.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_267.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_406.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_406.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_107.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_741.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_741.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_777.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_777.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_66.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_487.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_487.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_193.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_193.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_12.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_12.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_13.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_14.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_15.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_15.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_16.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_191.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_191.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_187.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_187.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_178.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_178.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_148.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_331.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_331.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_343.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_343.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_268.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_268.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_298.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_298.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_286.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_183.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_183.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_170.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_170.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_144.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_144.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_79.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_567.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_567.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_251.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_251.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_103.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3771.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3771.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_235.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_214.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_214.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF285-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF285.bestfold.profile.pattern_0.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF285/ZNF285-201-vs-ChipExo_models_ZNF285.bestfold.profile.pattern_0.n_166.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8325.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8325.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1608.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1608.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_758.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_758.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_254.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_254.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1145.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1145.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_123.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_1184.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_1184.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_580.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_580.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_286.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_217.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_217.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_182.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_182.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_116.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_113.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_81.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_432.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_432.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_6.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_7.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_5.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_789.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_789.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_457.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_457.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_361.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_361.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_73.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1858.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1858.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1238.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1238.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_573.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_573.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_104.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_104.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_162.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_162.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_11.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_12.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_129.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_77.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_59.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_72.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_71.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_410.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_410.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_34.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_925.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_925.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_82.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_313.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_731.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_731.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_68.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_180.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_148.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_8.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_7936.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_7936.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_690.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_690.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_364.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_364.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_125.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_67.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_180.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_3859.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_3859.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3506.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3506.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_626.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_626.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_74.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_2981.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_2981.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_176.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4518.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4518.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_411.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_411.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6037.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6037.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_490.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_490.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_386.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_386.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_219.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_219.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_180.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_152.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_152.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_94.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_51.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4055.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4055.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2368.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2368.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_1347.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_1347.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_319.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_319.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_163.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_163.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_46.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2327.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2327.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1763.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1763.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_70.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_65.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_26.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_211.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_211.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_190.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_190.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_2.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_835.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_835.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_156.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_156.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_38.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_8686.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_8686.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_5420.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_5420.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_442.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_442.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_280.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_280.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_245.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_245.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_234.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_234.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_179.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_179.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_117.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_85.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_85.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_62.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_55.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_54.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_48.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3238.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3238.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2591.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2591.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2515.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2515.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_1885.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_1885.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1109.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_365.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_365.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_61.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_158.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_158.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_97.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_97.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_78.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_121.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_43.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_98.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_98.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_41.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_5.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_6.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_7.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_167.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_167.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_156.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_156.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_101.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_96.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_80.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_57.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_115.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_108.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_64.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_44.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_36.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_6.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1112.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_69.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_53.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_534.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_534.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_266.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_266.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_27.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_195.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_195.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_33.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_11.n_30.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_12.n_25.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_13.n_23.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_14.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_114.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_63.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_52.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_49.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_42.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_39.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_37.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_35.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_58.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_4.n_20.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_2811.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_2811.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_962.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_962.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_708.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_708.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_286.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_45.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_95.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_60.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_181.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_137.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_86.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_40.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_24.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_8444.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_8444.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_205.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_205.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_22.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.CWM.trim_0.25 -bits -trimMOT2 0.25 &
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3405.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_0.n_3405.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_1.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_2.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_3.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_4.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_5.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_6.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_7.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_8.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF585A/ZNF585A-201-vs-ChipExo_models_ZNF585A.bestfold.profile.pattern_9.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_710.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_0.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_10.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_11.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_11.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_155.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_1.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_105.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_2.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_3.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_4.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_5.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_6.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_7.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_8.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-ChipExo_models_ZNF708.bestfold.profile.pattern_9.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_552.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_552.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_1.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF708/ZNF708-201-vs-Hughes_GR_models_ZNF708.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_0.n_509.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_1.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_3.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_4.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_6.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF879-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF879/ZNF879-201-vs-ChipExo_models_ZNF879.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-201-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_0.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_1.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_2.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF701-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF701/ZNF701-207-vs-ChipExo_models_ZNF701.bestfold.profile.pattern_3.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2583.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_0.n_2583.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF707-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_310.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF707/ZNF707-201-vs-ChipExo_models_ZNF707.bestfold.profile.pattern_1.n_310.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_0.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_1.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_2.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF45.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-ChipExo_models_ZNF45.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_177.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_2.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_3.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_4.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_5.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF45/ZNF45-201-vs-Hughes_NB_models_ZNF45.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2585.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_0.n_2585.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_326.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_1.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_172.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_2.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_123.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_3.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_4.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF44/ZNF44-203-vs-ChipExo_models_ZNF44.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_930.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_0.n_930.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_578.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_1.n_578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_GR_models_ZNF41.bestfold.profile.pattern_2.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_217.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_0.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_1.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_2.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF41.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF41/ZNF41-201-vs-Hughes_NB_models_ZNF41.bestfold.profile.pattern_4.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_1931.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_1931.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_1.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF682/ZNF682-201-vs-ChipExo_models_ZNF682.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_266.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_0.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_1.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_2.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_3.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_4.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_5.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_6.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF681-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF681/ZNF681-201-vs-ChipExo_models_ZNF681.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_678.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_678.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_1.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-ChipExo_models_ZNF684.bestfold.profile.pattern_2.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_0.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_2.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF684.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF684/ZNF684-203-vs-Hughes_NB_models_ZNF684.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF880-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF880/ZNF880-202-vs-ChipExo_models_ZNF880.bestfold.profile.pattern_0.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_0.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_2.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF677/ZNF677-201-vs-Hughes_GR_models_ZNF677.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_3575.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_3575.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_727.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_1.n_727.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_2.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_3.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-ChipExo_models_ZNF675.bestfold.profile.pattern_4.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_3294.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_0.n_3294.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_1578.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_1.n_1578.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_1329.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_2.n_1329.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_3.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_4.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF675/ZNF675-201-vs-Hughes_NB_models_ZNF675.bestfold.profile.pattern_6.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2868.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_0.n_2868.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1726.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_1.n_1726.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_383.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_2.n_383.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_3.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF674/ZNF674-201-vs-ChipExo_models_ZNF674.bestfold.profile.pattern_4.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3903.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_3903.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_1106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_1.n_1106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_415.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_2.n_415.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_3.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF671/ZNF671-201-vs-ChipExo_models_ZNF671.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_0.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF175/ZNF175-201-vs-Hughes_GR_models_ZNF175.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1781.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_0.n_1781.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_10.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_11.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_12.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_812.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_1.n_812.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_196.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_2.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_186.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_3.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_164.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_4.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_143.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_5.n_143.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_6.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_7.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_8.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_85.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-ChipExo_models_ZNF778.bestfold.profile.pattern_9.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1406.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_1406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_315.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_1.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_2.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_3.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF778/ZNF778-207-vs-Hughes_GR_models_ZNF778.bestfold.profile.pattern_4.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_386.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_0.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_1.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF776-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF776/ZNF776-201-vs-ChipExo_models_ZNF776.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_399.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_0.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_193.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_1.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_2.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_128.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_3.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_4.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_5.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF777/ZNF777-201-vs-ChipExo_models_ZNF777.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-201-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-202-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-213-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-207-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_697.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/CTCF/CTCF-211-vs-Hughes_NB_models_CTCF.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_0.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_1.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_2.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_3.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_5.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_6.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_7.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_8.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF197/ZNF197-202-vs-ChipExo_models_ZNF197.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_0.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_1.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_2.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_3.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF550/ZNF550-201-vs-ChipExo_models_ZNF550.bestfold.profile.pattern_6.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_215.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_0.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_1.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_2.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-ChipExo_models_ZNF454.bestfold.profile.pattern_3.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF454.bestfold.profile.pattern_0.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_GR_models_ZNF454.bestfold.profile.pattern_0.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_887.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_887.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_614.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF454/ZNF454-201-vs-Hughes_NB_models_ZNF454.bestfold.profile.pattern_1.n_614.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_637.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_0.n_637.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_92.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_1.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_2.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_3.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_4.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_6.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF519.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF519/ZNF519-207-vs-Hughes_NB_models_ZNF519.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_978.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_0.n_978.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_834.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIC2/ZIC2-201-vs-Hughes_NB_models_ZIC2.bestfold.profile.pattern_1.n_834.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF513/ZNF513-201-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF513/ZNF513-202-vs-Hughes_GR_models_ZNF513.bestfold.profile.pattern_0.n_342.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_377.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_0.n_377.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_185.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_1.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_126.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_2.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_3.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_4.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_5.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_6.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_7.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_8.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF222-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF222/ZNF222-201-vs-ChipExo_models_ZNF222.bestfold.profile.pattern_9.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_679.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_0.n_679.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_255.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_1.n_255.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_2.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_3.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_4.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF223.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF223/ZNF223-201-vs-ChipExo_models_ZNF223.bestfold.profile.pattern_5.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_194.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_0.n_194.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_1.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_2.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF224/ZNF224-201-vs-ChipExo_models_ZNF224.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_191.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_0.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_1.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF225.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF225/ZNF225-201-vs-ChipExo_models_ZNF225.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_287.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_0.n_287.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_122.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_1.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_2.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_3.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_4.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF383/ZNF383-201-vs-ChipExo_models_ZNF383.bestfold.profile.pattern_5.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_1771.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_0.n_1771.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1669.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_1.n_1669.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_324.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_2.n_324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_207.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_3.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF425/ZNF425-201-vs-ChipExo_models_ZNF425.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2056.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_0.n_2056.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_174.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_1.n_174.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_164.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_2.n_164.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_3.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF350/ZNF350-201-vs-Hughes_GR_models_ZNF350.bestfold.profile.pattern_5.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5545.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_5545.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_105.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_10.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_104.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_11.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_12.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_13.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_14.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_745.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_1.n_745.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_600.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_2.n_600.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_238.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_3.n_238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_213.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_4.n_213.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_5.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_185.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_6.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_184.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_7.n_184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_8.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_116.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM1/PRDM1-201-vs-Hughes_GR_models_PRDM1.bestfold.profile.pattern_9.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_964.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_964.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_10.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_10.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_11.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_11.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_12.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_12.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_502.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_1.n_502.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_2.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_3.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_4.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_5.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_6.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_8.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_PRDM9.bestfold.profile.pattern_9.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PRDM9/PRDM9-201-vs-ChipExo_models_PRDM9.bestfold.profile.pattern_9.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4718.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_0.n_4718.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_315.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_1.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_210.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_2.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_178.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_3.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_120.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_4.n_120.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_5.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69B.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69B/ZFP69B-201-vs-ChipExo_models_ZFP69B.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_0.n_402.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_1.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_2.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN5C-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN5C/ZSCAN5C-202-vs-Hughes_GR_models_ZSCAN5C.bestfold.profile.pattern_3.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_0.n_1034.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_1.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_2.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_3.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_4.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF81/ZNF81-202-vs-ChipExo_models_ZNF81.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-ChipExo_models_ZNF85.bestfold.profile.pattern_0.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_702.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_0.n_702.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_1.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_2.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF85-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF85/ZNF85-202-vs-Hughes_GR_models_ZNF85.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_0.n_5553.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_1.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_2.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_3.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF84-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF84/ZNF84-201-vs-ChipExo_models_ZNF84.bestfold.profile.pattern_4.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_6113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_805.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_1.n_805.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_306.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_2.n_306.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_198.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_3.n_198.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_153.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_4.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF736/ZNF736-201-vs-ChipExo_models_ZNF736.bestfold.profile.pattern_5.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_116.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_0.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_1.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_2.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF492-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF492/ZNF492-201-vs-ChipExo_models_ZNF492.bestfold.profile.pattern_6.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_144.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_0.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF496/ZNF496-201-vs-ChipExo_models_ZNF496.bestfold.profile.pattern_1.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_154.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_0.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_1.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_2.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_3.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_4.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF18.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-ChipExo_models_ZNF18.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4076.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_0.n_4076.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_172.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_1.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_154.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_2.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_3.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF18/ZNF18-201-vs-Hughes_GR_models_ZNF18.bestfold.profile.pattern_4.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_519.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_0.n_519.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_435.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_1.n_435.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_2.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_3.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_4.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_4.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF19.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF19/ZNF19-201-vs-ChipExo_models_ZNF19.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_971.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_0.n_971.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_728.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_1.n_728.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_580.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_2.n_580.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_3.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_4.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF780A.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF780A/ZNF780A-201-vs-ChipExo_models_ZNF780A.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_0.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_GR_models_ZNF16.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_0.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF16/ZNF16-201-vs-Hughes_NB_models_ZNF16.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_514.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_0.n_514.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_366.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_1.n_366.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_155.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_2.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_126.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_3.n_126.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_4.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_5.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_6.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_7.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_8.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF17/ZNF17-201-vs-ChipExo_models_ZNF17.bestfold.profile.pattern_9.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-202-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_0.n_859.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_1.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF10/ZNF10-201-vs-ChipExo_models_ZNF10.bestfold.profile.pattern_2.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_387.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_0.n_387.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF12/ZNF12-201-vs-ChipExo_models_ZNF12.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-201-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_0.n_380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_1.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_2.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_3.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_4.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_5.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_6.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_7.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_8.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF124/ZNF124-206-vs-ChipExo_models_ZNF124.bestfold.profile.pattern_9.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_1.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_2.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF7/KLF7-201-vs-Hughes_GR_models_KLF7.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-201-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_894.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_1.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_2.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_3.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_4.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_5.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF649//oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29-2/ZNF649-207-vs-ChipExo_models_ZNF649.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6717.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_0.n_6717.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_346.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_1.n_346.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_100.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF680/ZNF680-201-vs-Hughes_GR_models_ZNF680.bestfold.profile.pattern_2.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_251.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_0.n_251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF641-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF641/ZNF641-201-vs-ChipExo_models_ZNF641.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1338.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_1338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_205.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_1.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_2.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_3.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_88.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_4.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_6.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF304/ZNF304-201-vs-ChipExo_models_ZNF304.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_0.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF302/ZNF302-201-vs-ChipExo_models_ZNF302.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_293.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_0.n_293.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_1.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_2.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF300-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF300/ZNF300-201-vs-ChipExo_models_ZNF300.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_834.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_0.n_834.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF398/ZNF398-202-vs-ChipExo_models_ZNF398.bestfold.profile.pattern_1.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2409.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_0.n_2409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_162.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_1.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_2.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_3.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_4.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF547.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-ChipExo_models_ZNF547.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF547/ZNF547-201-vs-Hughes_GR_models_ZNF547.bestfold.profile.pattern_0.n_1175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF540-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF540/ZNF540-201-vs-ChipExo_models_ZNF540.bestfold.profile.pattern_0.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_815.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_0.n_815.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_700.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_1.n_700.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_2.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-ChipExo_models_ZNF543.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_0.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF543.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF543/ZNF543-201-vs-Hughes_GR_models_ZNF543.bestfold.profile.pattern_6.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_523.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_0.n_523.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_237.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_1.n_237.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_169.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_2.n_169.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_3.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_4.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_5.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_6.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF460/ZNF460-201-vs-ChipExo_models_ZNF460.bestfold.profile.pattern_7.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1245.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_0.n_1245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_1.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_2.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_3.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_5.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_6.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-ChipExo_models_ZNF549.bestfold.profile.pattern_9.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2766.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_0.n_2766.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_272.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_1.n_272.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_159.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_2.n_159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_3.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF549/ZNF549-201-vs-Hughes_GR_models_ZNF549.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_150.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_0.n_150.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_1.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_2.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_4.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF548/ZNF548-201-vs-ChipExo_models_ZNF548.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_215.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_0.n_215.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_1.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_2.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_3.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-ChipExo_models_ZNF264.bestfold.profile.pattern_4.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_209.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_0.n_209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_163.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_1.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_GR_models_ZNF264.bestfold.profile.pattern_2.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1363.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_0.n_1363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_936.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_1.n_936.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_473.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_2.n_473.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_231.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_3.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_4.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_5.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF264/ZNF264-201-vs-Hughes_NB_models_ZNF264.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1324.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_1324.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF266/ZNF266-202-vs-ChipExo_models_ZNF266.bestfold.profile.pattern_1.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-201-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_0.n_587.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_1.n_232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_2.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_3.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF267-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF267/ZNF267-206-vs-ChipExo_models_ZNF267.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1526.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF260/ZNF260-202-vs-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_1526.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1517.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_0.n_1517.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_1.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_2.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP69/ZFP69-201-vs-ChipExo_models_ZFP69.bestfold.profile.pattern_3.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5533.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_0.n_5533.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1736.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_1.n_1736.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_962.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_2.n_962.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_594.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_3.n_594.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_203.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_4.n_203.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_188.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_5.n_188.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_6.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_7.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF263/ZNF263-201-vs-ChipExo_models_ZNF263.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_92.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_0.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF705G-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF705G.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF705G/ZNF705G-201-vs-ChipExo_models_ZNF705G.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_199.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_0.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_130.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_1.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_2.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP82/ZFP82-201-vs-Hughes_GR_models_ZFP82.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_338.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_338.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_10.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_11.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_12.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_13.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_14.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_15.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_16.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_17.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_18.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_19.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_297.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_1.n_297.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_20.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_21.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_22.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_23.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_24.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_25.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_26.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_27.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_27.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_28.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_28.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_253.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_2.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_205.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_3.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_4.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_104.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_5.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_6.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_100.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_7.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_8.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF280A/ZNF280A-201-vs-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_9.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_0.n_122.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_0.n_122.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_1.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_2.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_2.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_3.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_4.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_4.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/HKR1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_HKR1.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/HKR1/HKR1-201-vs-ChipExo_models_HKR1.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_585.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_0.n_585.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF692/ZNF692-201-vs-Hughes_NB_models_ZNF692.bestfold.profile.pattern_1.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1350.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_0.n_1350.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1323.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_1.n_1323.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_1192.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_2.n_1192.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_133.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_3.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_100.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_4.n_100.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_5.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_6.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_7.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_8.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF695/ZNF695-201-vs-ChipExo_models_ZNF695.bestfold.profile.pattern_9.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_599.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF596/ZNF596-201-vs-Hughes_GR_models_ZNF596.bestfold.profile.pattern_0.n_599.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_2.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_3.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_5.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF594/ZNF594-201-vs-Hughes_GR_models_ZNF594.bestfold.profile.pattern_8.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_0.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_2.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF595-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF595/ZNF595-201-vs-Hughes_GR_models_ZNF595.bestfold.profile.pattern_3.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1018.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_0.n_1018.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_10.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_291.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_1.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_2.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_92.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_3.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_5.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_6.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_7.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF605-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF605/ZNF605-202-vs-ChipExo_models_ZNF605.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_0.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_1.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_2.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_5.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_8.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIK1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIK1.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIK1/ZIK1-201-vs-ChipExo_models_ZIK1.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1827.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_0.n_1827.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF768-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1722.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF768/ZNF768-201-vs-Hughes_GR_models_ZNF768.bestfold.profile.pattern_1.n_1722.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3261.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_3261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_1.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF765/ZNF765-201-vs-ChipExo_models_ZNF765.bestfold.profile.pattern_2.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_105.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_0.n_105.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF764/ZNF764-201-vs-ChipExo_models_ZNF764.bestfold.profile.pattern_2.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_8999.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_0.n_8999.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_323.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_1.n_323.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_2.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_3.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF766-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF766/ZNF766-201-vs-ChipExo_models_ZNF766.bestfold.profile.pattern_4.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_0.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_1.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_2.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-ChipExo_models_ZNF184.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_0.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_1.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF184/ZNF184-201-vs-Hughes_GR_models_ZNF184.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_185.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_0.n_185.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF181/ZNF181-201-vs-ChipExo_models_ZNF181.bestfold.profile.pattern_1.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_226.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_0.n_226.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_1.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_2.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_3.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_5.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF180/ZNF180-201-vs-ChipExo_models_ZNF180.bestfold.profile.pattern_6.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2020.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_0.n_2020.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_10.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_10.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_11.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_11.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_785.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_1.n_785.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_612.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_2.n_612.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_466.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_3.n_466.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_406.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_4.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_284.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_5.n_284.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_242.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_6.n_242.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_179.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_7.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_154.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_8.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF182/ZNF182-201-vs-ChipExo_models_ZNF182.bestfold.profile.pattern_9.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4274.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_0.n_4274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_291.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_1.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_176.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_2.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-ChipExo_models_ZNF189.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_9421.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_0.n_9421.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_1.n_1113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_367.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_2.n_367.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_315.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_3.n_315.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_296.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_4.n_296.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_5.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_6.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_7.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_8.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF189/ZNF189-201-vs-Hughes_NB_models_ZNF189.bestfold.profile.pattern_9.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_0.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_1.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF25.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF25/ZNF25-201-vs-ChipExo_models_ZNF25.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_0.n_1677.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_275.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_1.n_275.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_145.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_2.n_145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_3.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_4.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF26/ZNF26-201-vs-ChipExo_models_ZNF26.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_6199.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_0.n_6199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3396.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_1.n_3396.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_227.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_2.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_3.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_4.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_5.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_6.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF28-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF28/ZNF28-203-vs-ChipExo_models_ZNF28.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_241.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_0.n_241.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_1.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_4.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF37A/ZNF37A-201-vs-Hughes_GR_models_ZNF37A.bestfold.profile.pattern_5.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_0.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_1.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_2.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_3.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_6.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF114-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF114.bestfold.profile.pattern_7.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF114/ZNF114-201-vs-ChipExo_models_ZNF114.bestfold.profile.pattern_7.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_220.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_0.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_158.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_1.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF502-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF502/ZNF502-201-vs-Hughes_GR_models_ZNF502.bestfold.profile.pattern_2.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_2.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF90.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF90/ZNF90-201-vs-ChipExo_models_ZNF90.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7682.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_0.n_7682.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_1.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_2.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_3.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_4.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF506-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF506/ZNF506-201-vs-ChipExo_models_ZNF506.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_878.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_0.n_878.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_761.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_1.n_761.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF337/ZNF337-201-vs-ChipExo_models_ZNF337.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_527.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_527.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_461.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_1.n_461.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_2.n_371.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_3.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_4.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_5.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF334/ZNF334-201-vs-ChipExo_models_ZNF334.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_931.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_0.n_931.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_134.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_1.n_134.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_2.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_3.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_5.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_6.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF333/ZNF333-201-vs-ChipExo_models_ZNF333.bestfold.profile.pattern_8.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1036.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_0.n_1036.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_1.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_2.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-ChipExo_models_ZNF331.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2440.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_0.n_2440.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_357.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_1.n_357.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_273.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_2.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_3.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF331/ZNF331-201-vs-Hughes_GR_models_ZNF331.bestfold.profile.pattern_6.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_0.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF235/ZNF235-201-vs-ChipExo_models_ZNF235.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_818.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_0.n_818.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB12.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB12/ZBTB12-201-vs-Hughes_NB_models_ZBTB12.bestfold.profile.pattern_1.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_11267.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_0.n_11267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_320.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_1.n_320.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB14/ZBTB14-201-vs-Hughes_GR_models_ZBTB14.bestfold.profile.pattern_2.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_1020.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_1020.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_1.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_0.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_1.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_2.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_3.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB18/ZBTB18-201-vs-Hughes_NB_models_ZBTB18.bestfold.profile.pattern_4.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4522.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_0.n_4522.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_219.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_1.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_2.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_4.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF343-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF343/ZNF343-201-vs-ChipExo_models_ZNF343.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-203-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_0.n_6492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_10.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_1.n_3159.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_2.n_489.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_3.n_277.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_4.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_5.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_6.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_7.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_8.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF341/ZNF341-204-vs-Hughes_GR_models_ZNF341.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3475.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF436/ZNF436-201-vs-Hughes_GR_models_ZNF436.bestfold.profile.pattern_0.n_3475.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_788.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_0.n_788.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_1.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_2.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_3.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_5.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_6.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF430-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF430.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF430/ZNF430-201-vs-ChipExo_models_ZNF430.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_904.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_0.n_904.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_270.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_1.n_270.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF433/ZNF433-201-vs-ChipExo_models_ZNF433.bestfold.profile.pattern_2.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_0.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_88.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_1.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_2.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_3.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF432/ZNF432-201-vs-ChipExo_models_ZNF432.bestfold.profile.pattern_4.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_0.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_1.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_2.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF431/ZNF431-201-vs-ChipExo_models_ZNF431.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1454.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_1454.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_635.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_1.n_635.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_172.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_2.n_172.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_87.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_3.n_87.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_4.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_5.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_6.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF808/ZNF808-201-vs-ChipExo_models_ZNF808.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_146.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_0.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_133.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_1.n_133.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_2.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_3.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_4.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_6.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF805-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF805/ZNF805-201-vs-ChipExo_models_ZNF805.bestfold.profile.pattern_7.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_0.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_1.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN29-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN29/ZSCAN29-202-vs-Hughes_GR_models_ZSCAN29.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_0.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33B/ZNF33B-201-vs-ChipExo_models_ZNF33B.bestfold.profile.pattern_1.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-201-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_0.n_1283.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_1.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_2.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_3.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF33A/ZNF33A-203-vs-ChipExo_models_ZNF33A.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_0.n_186.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_1.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF7/ZNF7-202-vs-ChipExo_models_ZNF7.bestfold.profile.pattern_3.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_85.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_0.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_1.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF891-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF891/ZNF891-201-vs-ChipExo_models_ZNF891.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1754.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_0.n_1754.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_1.n_1125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1079.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_2.n_1079.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_3.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_4.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_5.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_6.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF2/ZNF2-201-vs-ChipExo_models_ZNF2.bestfold.profile.pattern_7.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-201-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_0.n_401.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF3/ZNF3-202-vs-ChipExo_models_ZNF3.bestfold.profile.pattern_1.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_0.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_1.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_2.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_4.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_5.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_6.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_7.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_8.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_GR_models_MZF1.bestfold.profile.pattern_9.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4449.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_4449.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_326.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_1.n_326.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_173.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MZF1/MZF1-201-vs-Hughes_NB_models_MZF1.bestfold.profile.pattern_2.n_173.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-201-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_0.n_5970.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF468/ZNF468-202-vs-ChipExo_models_ZNF468.bestfold.profile.pattern_1.n_233.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_0.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_1.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-ChipExo_models_ZNF8.bestfold.profile.pattern_2.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_2460.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_1.n_304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_2.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF8/ZNF8-201-vs-Hughes_GR_models_ZNF8.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF69-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_153.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF69/ZNF69-202-vs-ChipExo_models_ZNF69.bestfold.profile.pattern_0.n_153.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_831.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_0.n_831.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_1.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_2.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_3.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF157/ZNF157-201-vs-ChipExo_models_ZNF157.bestfold.profile.pattern_4.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_0.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_2.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_4.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF154-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF154/ZNF154-201-vs-ChipExo_models_ZNF154.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_0.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF790/ZNF790-201-vs-ChipExo_models_ZNF790.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_387.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_0.n_387.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_1.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_2.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF792-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF792.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF792/ZNF792-201-vs-ChipExo_models_ZNF792.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_1685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_0.n_1685.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_1175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_1.n_1175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_441.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_2.n_441.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_428.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_3.n_428.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_314.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_4.n_314.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_5.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF93-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF93/ZNF93-201-vs-ChipExo_models_ZNF93.bestfold.profile.pattern_6.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_0.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_1.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_2.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF98-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF98/ZNF98-201-vs-Hughes_GR_models_ZNF98.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_0.n_210.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_1.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_2.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_GR_models_ZSCAN31.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_0.n_1124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN31-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN31/ZSCAN31-201-vs-Hughes_NB_models_ZSCAN31.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_513.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_1.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_2.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_3.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-ChipExo_models_ZNF354A.bestfold.profile.pattern_4.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_465.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_0.n_465.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354A/ZNF354A-201-vs-Hughes_GR_models_ZNF354A.bestfold.profile.pattern_2.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_843.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_0.n_843.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF382/ZNF382-201-vs-Hughes_NB_models_ZNF382.bestfold.profile.pattern_1.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354B/ZNF354B-201-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF354B/ZNF354B-204-vs-ChipExo_models_ZNF354B.bestfold.profile.pattern_0.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF570.bestfold.profile.pattern_0.n_177.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF570/ZNF570-201-vs-ChipExo_models_ZNF570.bestfold.profile.pattern_0.n_177.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF570-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF570.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF570/ZNF570-201-vs-ChipExo_models_ZNF570.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_245.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_0.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_178.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_1.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF571-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF571/ZNF571-201-vs-ChipExo_models_ZNF571.bestfold.profile.pattern_3.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1393.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_0.n_1393.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_1.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_2.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF573-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF573/ZNF573-201-vs-ChipExo_models_ZNF573.bestfold.profile.pattern_3.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1481.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_0.n_1481.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_1224.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_1.n_1224.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_969.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_2.n_969.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_348.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_3.n_348.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_4.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_GR_models_ZNF574.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_1016.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_0.n_1016.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_761.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_1.n_761.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_484.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_2.n_484.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_363.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_3.n_363.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_214.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_4.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_5.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_6.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF574-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF574/ZNF574-201-vs-Hughes_NB_models_ZNF574.bestfold.profile.pattern_8.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_123.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF205/ZNF205-201-vs-ChipExo_models_ZNF205.bestfold.profile.pattern_0.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_2907.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_0.n_2907.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2525.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_1.n_2525.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1340.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_2.n_1340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_973.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_3.n_973.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_4.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF202-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF202.bestfold.profile.pattern_5.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF202/ZNF202-201-vs-ChipExo_models_ZNF202.bestfold.profile.pattern_5.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_1.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_2.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_3.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_4.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_5.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_7.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF200/ZNF200-201-vs-Hughes_NB_models_ZNF200.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-201-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-202-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-203-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_1951.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_1.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_2.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/PATZ1/PATZ1-204-vs-Hughes_GR_models_PATZ1.bestfold.profile.pattern_3.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4209.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_4209.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_1769.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_1.n_1769.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1304.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_2.n_1304.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_319.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_3.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_4.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_5.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-ChipExo_models_ZNF273.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_465.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_0.n_465.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_1.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_2.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_187.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_3.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_4.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_6.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF273.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF273/ZNF273-201-vs-Hughes_NB_models_ZNF273.bestfold.profile.pattern_7.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_800.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_0.n_800.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_131.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_1.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_2.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF274/ZNF274-201-vs-ChipExo_models_ZNF274.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8660.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_0.n_8660.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_11.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_11.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_775.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_1.n_775.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_627.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_2.n_627.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_228.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_3.n_228.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_158.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_4.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_5.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_6.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_7.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_8.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB26/ZBTB26-201-vs-Hughes_GR_models_ZBTB26.bestfold.profile.pattern_9.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_971.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_0.n_971.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_1.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_92.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_2.n_92.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_3.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_4.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-ChipExo_models_ZNF528.bestfold.profile.pattern_5.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1077.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_0.n_1077.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_850.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_1.n_850.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_753.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_2.n_753.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_727.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_3.n_727.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_445.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_4.n_445.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_5.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_5.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_6.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_6.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF528.bestfold.profile.pattern_7.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_GR_models_ZNF528.bestfold.profile.pattern_7.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4926.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_4926.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_968.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_1.n_968.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_541.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_2.n_541.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_336.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_3.n_336.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_147.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_4.n_147.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_110.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_5.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_6.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_7.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_8.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF528/ZNF528-201-vs-Hughes_NB_models_ZNF528.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_5990.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_0.n_5990.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_1.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_2.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_2.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_3.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_3.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_4.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_4.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_5.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_5.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_6.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_6.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75D-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF75D.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF75D/ZNF75D-201-vs-ChipExo_models_ZNF75D.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1616.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_0.n_1616.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_1059.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_1.n_1059.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_710.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_2.n_710.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_273.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_3.n_273.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_220.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_4.n_220.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_5.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_6.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_7.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_8.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP28-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP28/ZFP28-201-vs-Hughes_GR_models_ZFP28.bestfold.profile.pattern_9.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-201-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_0.n_218.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_1.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_2.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_3.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_4.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP90/ZFP90-205-vs-ChipExo_models_ZFP90.bestfold.profile.pattern_5.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_0.n_154.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_154.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_1.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_2.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_3.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_3.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_4.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_4.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_5.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_5.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_6.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_6.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_RBAK.bestfold.profile.pattern_9.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/RBAK/RBAK-201-vs-ChipExo_models_RBAK.bestfold.profile.pattern_9.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_575.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_0.n_575.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-ChipExo_models_ZNF582.bestfold.profile.pattern_1.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_409.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_409.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_2.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_3.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_4.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_4.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF582.bestfold.profile.pattern_5.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF582/ZNF582-201-vs-Hughes_GR_models_ZNF582.bestfold.profile.pattern_5.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_135.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_0.n_135.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_1.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_2.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF584.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF584/ZNF584-201-vs-ChipExo_models_ZNF584.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_506.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_0.n_506.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_1.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF587-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF587/ZNF587-201-vs-ChipExo_models_ZNF587.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF586-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3380.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF586/ZNF586-201-vs-Hughes_GR_models_ZNF586.bestfold.profile.pattern_0.n_3380.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_2050.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_0.n_2050.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_1.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_2.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_3.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_4.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_5.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_6.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF611-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF611/ZNF611-201-vs-ChipExo_models_ZNF611.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_3983.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_0.n_3983.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_10.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_276.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_1.n_276.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_202.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_2.n_202.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_3.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_4.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_5.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_6.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_7.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_8.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-ChipExo_models_ZNF610.bestfold.profile.pattern_9.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_479.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_0.n_479.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_384.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_1.n_384.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_340.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_2.n_340.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_3.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF610-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF610/ZNF610-201-vs-Hughes_GR_models_ZNF610.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_149.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_149.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_1.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_116.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_2.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_3.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_4.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_5.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_6.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF613/ZNF613-201-vs-ChipExo_models_ZNF613.bestfold.profile.pattern_7.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF615/ZNF615-201-vs-ChipExo_models_ZNF615.bestfold.profile.pattern_0.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_0.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_1.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF614/ZNF614-201-vs-ChipExo_models_ZNF614.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_234.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_0.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_10.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_11.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_11.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_13.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_13.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_15.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_15.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_1.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_2.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_3.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_4.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_5.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_6.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_6.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_7.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_7.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_8.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF616.bestfold.profile.pattern_9.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF616/ZNF616-204-vs-ChipExo_models_ZNF616.bestfold.profile.pattern_9.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_131.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_0.n_131.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_1.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_2.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF619/ZNF619-201-vs-ChipExo_models_ZNF619.bestfold.profile.pattern_3.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_7074.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_1.n_528.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_2.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_3.n_263.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/YY1/YY1-201-vs-Hughes_NB_models_YY1.bestfold.profile.pattern_4.n_160.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_0.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_4.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF34/ZNF34-201-vs-Hughes_GR_models_ZNF34.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2300.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2300.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_10.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2010.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_1.n_2010.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1817.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_2.n_1817.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_704.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_3.n_704.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_641.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_4.n_641.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_536.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_5.n_536.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_494.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_6.n_494.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_254.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_7.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_196.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_8.n_196.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_98.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_GR_models_ZNF35.bestfold.profile.pattern_9.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_728.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_0.n_728.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_10.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_11.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_12.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_119.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_1.n_119.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_2.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_3.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_4.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_5.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_6.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_7.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_8.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF35/ZNF35-201-vs-Hughes_NB_models_ZNF35.bestfold.profile.pattern_9.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_0.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_1.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF30.bestfold.profile.pattern_2.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-ChipExo_models_ZNF30.bestfold.profile.pattern_2.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_274.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_0.n_274.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_118.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_1.n_118.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_2.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_3.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF30/ZNF30-201-vs-Hughes_GR_models_ZNF30.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_492.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_0.n_492.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_360.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_1.n_360.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_2.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF530.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF530/ZNF530-201-vs-ChipExo_models_ZNF530.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-201-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_0.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_2.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_5.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-ChipExo_models_ZNF669.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_0.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_1.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_3.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_GR_models_ZNF669.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_0.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_1.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_2.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_3.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF669-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF669/ZNF669-204-vs-Hughes_NB_models_ZNF669.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_413.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_GR_models_ZNF250.bestfold.profile.pattern_0.n_413.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4477.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_4477.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_459.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_1.n_459.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_2.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_3.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_5.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF250/ZNF250-201-vs-Hughes_NB_models_ZNF250.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-201-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_0.n_2378.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_1.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF101-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF101/ZNF101-203-vs-ChipExo_models_ZNF101.bestfold.profile.pattern_2.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3663.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_0.n_3663.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_236.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_1.n_236.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_2.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_4.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF100-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF100/ZNF100-201-vs-ChipExo_models_ZNF100.bestfold.profile.pattern_5.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_0.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_1.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_2.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-ChipExo_models_ZNF324.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1232.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_0.n_1232.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_1.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_2.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_3.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_4.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324/ZNF324-201-vs-Hughes_GR_models_ZNF324.bestfold.profile.pattern_5.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6028.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_0.n_6028.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_1.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_2.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF248.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF248/ZNF248-201-vs-ChipExo_models_ZNF248.bestfold.profile.pattern_3.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4095.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_0.n_4095.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_128.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_1.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_2.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF320.bestfold.profile.pattern_3.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-ChipExo_models_ZNF320.bestfold.profile.pattern_3.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_3723.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_3723.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2873.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_1.n_2873.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_399.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_2.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_231.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_3.n_231.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF320/ZNF320-204-vs-Hughes_GR_models_ZNF320.bestfold.profile.pattern_4.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_0.n_1446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF322/ZNF322-201-vs-Hughes_GR_models_ZNF322.bestfold.profile.pattern_1.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_853.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_0.n_853.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_1.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF329/ZNF329-201-vs-Hughes_GR_models_ZNF329.bestfold.profile.pattern_2.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_740.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_0.n_740.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_1.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF789-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF789/ZNF789-201-vs-ChipExo_models_ZNF789.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_261.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_0.n_261.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_1.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_2.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-ChipExo_models_ZNF667.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_0.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF667-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF667/ZNF667-201-vs-Hughes_GR_models_ZNF667.bestfold.profile.pattern_2.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_0.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_1.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_2.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_3.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_4.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_5.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-ChipExo_models_ZNF816.bestfold.profile.pattern_6.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1499.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF816/ZNF816-203-vs-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_1499.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_4137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_10.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_11.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_565.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_1.n_565.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_399.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_2.n_399.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_291.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_3.n_291.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_278.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_4.n_278.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_256.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_5.n_256.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_6.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_7.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_8.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF12/KLF12-201-vs-Hughes_GR_models_KLF12.bestfold.profile.pattern_9.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_1.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_2.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF10/KLF10-201-vs-Hughes_NB_models_KLF10.bestfold.profile.pattern_3.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_0.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_1.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM2_1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZIM2_1/ZIM2_1-201-vs-ChipExo_models_ZIM2_1.bestfold.profile.pattern_2.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8879.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_8879.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_520.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_1.n_520.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_193.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_2.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/KLF14/KLF14-201-vs-Hughes_NB_models_KLF14.bestfold.profile.pattern_3.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1690.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP42/ZFP42-201-vs-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_1690.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-201-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_0.n_9258.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_10.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_11.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_1.n_529.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_2.n_371.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_3.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_4.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_5.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_6.n_216.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_7.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_8.n_155.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/OSR2-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/OSR2/OSR2-202-vs-Hughes_GR_models_OSR2.bestfold.profile.pattern_9.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_870.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_0.n_870.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_1.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF714-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF714/ZNF714-201-vs-ChipExo_models_ZNF714.bestfold.profile.pattern_2.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_258.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_0.n_258.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_247.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_1.n_247.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_2.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_3.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_56.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_4.n_56.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_5.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_5.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_6.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_6.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_7.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_7.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF716-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF716.bestfold.profile.pattern_8.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF716/ZNF716-201-vs-ChipExo_models_ZNF716.bestfold.profile.pattern_8.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_253.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_0.n_253.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF860-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF860/ZNF860-201-vs-ChipExo_models_ZNF860.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5712.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_0.n_5712.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_10.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_11.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_12.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_644.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_1.n_644.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_371.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_2.n_371.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_245.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_3.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_4.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_5.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_6.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_7.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_8.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF429-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF429/ZNF429-201-vs-ChipExo_models_ZNF429.bestfold.profile.pattern_9.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_0.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_1.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SNAI1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_SNAI1.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/SNAI1/SNAI1-201-vs-Hughes_GR_models_SNAI1.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_422.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_0.n_422.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_146.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_1.n_146.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_88.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_2.n_88.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_3.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF79-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF79.bestfold.profile.pattern_4.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF79/ZNF79-201-vs-ChipExo_models_ZNF79.bestfold.profile.pattern_4.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_358.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_358.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_1.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_2.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_3.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_4.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_5.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_6.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_7.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_8.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF71/ZNF71-203-vs-Hughes_NB_models_ZNF71.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-201-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-202-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF76/ZNF76-209-vs-Hughes_GR_models_ZNF76.bestfold.profile.pattern_0.n_4561.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_0.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_89.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_1.n_89.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_2.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_3.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_47.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_4.n_47.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_5.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_6.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_7.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF77-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF77/ZNF77-201-vs-ChipExo_models_ZNF77.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_0.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_1.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_2.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF74-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF74.bestfold.profile.pattern_4.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF74/ZNF74-201-vs-ChipExo_models_ZNF74.bestfold.profile.pattern_4.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5654.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_5654.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_165.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_1.n_165.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_2.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF141/ZNF141-201-vs-ChipExo_models_ZNF141.bestfold.profile.pattern_3.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1468.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_0.n_1468.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_1030.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_1.n_1030.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_396.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_2.n_396.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF140/ZNF140-202-vs-Hughes_GR_models_ZNF140.bestfold.profile.pattern_3.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6696.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_0.n_6696.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_83.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF146/ZNF146-201-vs-Hughes_GR_models_ZNF146.bestfold.profile.pattern_1.n_83.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP1-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_227.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP1/ZFP1-201-vs-ChipExo_models_ZFP1.bestfold.profile.pattern_0.n_227.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1055.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_0.n_1055.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP3/ZFP3-201-vs-Hughes_NB_models_ZFP3.bestfold.profile.pattern_1.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2975.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_2975.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_1.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF783/ZNF783-202-vs-ChipExo_models_ZNF783.bestfold.profile.pattern_2.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_0.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_1.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF782.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF782/ZNF782-208-vs-ChipExo_models_ZNF782.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3156.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_0.n_3156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_576.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_1.n_576.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_93.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_2.n_93.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_75.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_3.n_75.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_4.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_5.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_6.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_7.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF786-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF786/ZNF786-202-vs-ChipExo_models_ZNF786.bestfold.profile.pattern_8.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_0.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF785-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF785/ZNF785-201-vs-ChipExo_models_ZNF785.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-201-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_0.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_1.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_2.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF784/ZNF784-202-vs-Hughes_GR_models_ZNF784.bestfold.profile.pattern_8.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_421.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_421.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_1.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF662/ZNF662-201-vs-ChipExo_models_ZNF662.bestfold.profile.pattern_2.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_0.n_9551.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_10.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_1.n_839.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_2.n_395.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_3.n_362.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_4.n_336.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_5.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_6.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_7.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_8.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_GR_models_ZSCAN22.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_0.n_9024.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_1.n_471.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_2.n_269.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_3.n_199.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_4.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_5.n_106.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_6.n_91.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_7.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN22-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN22/ZSCAN22-201-vs-Hughes_NB_models_ZSCAN22.bestfold.profile.pattern_8.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_84.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_84.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_1.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_2.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_6.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_7.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/GLI4/GLI4-201-vs-Hughes_GR_models_GLI4.bestfold.profile.pattern_8.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_207.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_0.n_207.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_10.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_11.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_12.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_13.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_14.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_15.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_16.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_16.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_17.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_17.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_18.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_18.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_19.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_19.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_168.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_1.n_168.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_20.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_20.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_21.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_21.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_22.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_22.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_2.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_97.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_3.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_90.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_4.n_90.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_76.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_5.n_76.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_6.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_7.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_8.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF445/ZNF445-201-vs-ChipExo_models_ZNF445.bestfold.profile.pattern_9.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2285.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_2285.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF440/ZNF440-201-vs-ChipExo_models_ZNF440.bestfold.profile.pattern_1.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2964.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_0.n_2964.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_10.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_11.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1494.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_1.n_1494.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1477.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_2.n_1477.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_467.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_3.n_467.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_152.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_4.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_5.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_6.n_110.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_7.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_8.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF441/ZNF441-201-vs-ChipExo_models_ZNF441.bestfold.profile.pattern_9.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_0.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_1.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_2.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF442-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF442/ZNF442-201-vs-ChipExo_models_ZNF442.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_0.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_2.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_3.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF443-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF443.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF443/ZNF443-201-vs-ChipExo_models_ZNF443.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1356.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_0.n_1356.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_130.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF449/ZNF449-201-vs-Hughes_GR_models_ZNF449.bestfold.profile.pattern_1.n_130.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_267.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_0.n_267.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN3/ZKSCAN3-201-vs-ChipExo_models_ZKSCAN3.bestfold.profile.pattern_1.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_406.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_0.n_406.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_1.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_107.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_2.n_107.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_3.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_4.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_5.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_6.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN2-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN2.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN2/ZKSCAN2-201-vs-ChipExo_models_ZKSCAN2.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-201-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_0.n_4908.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_1.n_370.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_2.n_128.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_3.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_4.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZKSCAN5/ZKSCAN5-204-vs-ChipExo_models_ZKSCAN5.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_741.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_0.n_741.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_1.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_2.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF567-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF567/ZNF567-201-vs-ChipExo_models_ZNF567.bestfold.profile.pattern_3.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_777.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_0.n_777.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_1.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_66.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_2.n_66.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF565-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF565/ZNF565-201-vs-ChipExo_models_ZNF565.bestfold.profile.pattern_3.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF564-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_487.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF564/ZNF564-201-vs-ChipExo_models_ZNF564.bestfold.profile.pattern_0.n_487.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-201-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_0.n_1503.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_1.n_792.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_2.n_449.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_3.n_222.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_4.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_5.n_102.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_6.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_7.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF563-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF563/ZNF563-203-vs-Hughes_GR_models_ZNF563.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_0.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_1.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_2.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_3.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_4.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_5.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_6.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF562-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF562.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF562/ZNF562-202-vs-ChipExo_models_ZNF562.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_193.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_0.n_193.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_10.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_11.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_12.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_12.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_13.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_13.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_14.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_14.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_15.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_15.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_16.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_16.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_191.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_1.n_191.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_187.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_2.n_187.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_178.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_3.n_178.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_148.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_4.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_5.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_6.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_7.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_8.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF561-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF561/ZNF561-201-vs-ChipExo_models_ZNF561.bestfold.profile.pattern_9.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-ChipExo_models_ZNF214.bestfold.profile.pattern_0.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_0.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF214/ZNF214-201-vs-Hughes_GR_models_ZNF214.bestfold.profile.pattern_1.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_331.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_0.n_331.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_1.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_2.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_3.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_4.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_5.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_6.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_7.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF211/ZNF211-201-vs-ChipExo_models_ZNF211.bestfold.profile.pattern_8.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_0.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_1.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF213-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF213/ZNF213-201-vs-Hughes_GR_models_ZNF213.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_0.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_1.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF212/ZNF212-201-vs-ChipExo_models_ZNF212.bestfold.profile.pattern_2.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_343.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_0.n_343.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_268.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_1.n_268.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_2.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP14-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZFP14/ZFP14-201-vs-ChipExo_models_ZFP14.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_298.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_0.n_298.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_10.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_11.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_12.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_1.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_183.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_2.n_183.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_170.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_3.n_170.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_144.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_4.n_144.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_5.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_94.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_6.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_79.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_7.n_79.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_8.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF846-205/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF846/ZNF846-205-vs-ChipExo_models_ZNF846.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_567.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_567.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_251.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_1.n_251.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_2.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_103.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_3.n_103.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_4.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF287/ZNF287-201-vs-ChipExo_models_ZNF287.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3771.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_3771.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_235.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_1.n_235.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_214.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_2.n_214.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_3.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF284/ZNF284-201-vs-ChipExo_models_ZNF284.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF285-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF285.bestfold.profile.pattern_0.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF285/ZNF285-201-vs-ChipExo_models_ZNF285.bestfold.profile.pattern_0.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8325.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_0.n_8325.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_1.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_2.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF282/ZNF282-204-vs-ChipExo_models_ZNF282.bestfold.profile.pattern_4.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1608.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_1608.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_758.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_1.n_758.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_254.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_2.n_254.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_3.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF283/ZNF283-201-vs-ChipExo_models_ZNF283.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1145.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_0.n_1145.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_123.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF281/ZNF281-201-vs-Hughes_GR_models_ZNF281.bestfold.profile.pattern_1.n_123.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_1184.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_0.n_1184.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_10.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_11.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_580.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_1.n_580.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_2.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_217.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_3.n_217.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_182.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_4.n_182.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_116.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_5.n_116.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_113.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_6.n_113.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_81.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_7.n_81.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_8.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF823-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF823/ZNF823-201-vs-ChipExo_models_ZNF823.bestfold.profile.pattern_9.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_432.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_0.n_432.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_1.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_2.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_3.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_4.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_6.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_6.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF566-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF566.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF566/ZNF566-201-vs-ChipExo_models_ZNF566.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-201-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-203-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-204-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_685.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_10.n_140.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_11.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_12.n_136.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_13.n_132.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_14.n_127.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_15.n_124.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_16.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_17.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_18.n_109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_19.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_1.n_601.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_20.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_21.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_22.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_23.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_2.n_446.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_3.n_318.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_4.n_260.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_5.n_200.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_6.n_189.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_7.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_8.n_175.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/IKZF3/IKZF3-207-vs-Hughes_GR_models_IKZF3.bestfold.profile.pattern_9.n_166.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_0.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_1.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_2.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_3.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_4.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF626.bestfold.profile.pattern_5.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF626/ZNF626-204-vs-ChipExo_models_ZNF626.bestfold.profile.pattern_5.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_789.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_0.n_789.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_457.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_1.n_457.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF627-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF627/ZNF627-201-vs-ChipExo_models_ZNF627.bestfold.profile.pattern_2.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF620-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_361.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF620/ZNF620-201-vs-ChipExo_models_ZNF620.bestfold.profile.pattern_0.n_361.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_73.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_0.n_73.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_1.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_2.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-ChipExo_models_ZNF621.bestfold.profile.pattern_3.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1858.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_1858.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1238.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF621/ZNF621-202-vs-Hughes_NB_models_ZNF621.bestfold.profile.pattern_1.n_1238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_573.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_0.n_573.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_104.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_1.n_104.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF749/ZNF749-201-vs-ChipExo_models_ZNF749.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_162.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_0.n_162.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_10.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_11.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_11.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_12.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_12.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_129.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_1.n_129.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_2.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_3.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_77.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_4.n_77.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_5.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_6.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_59.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_7.n_59.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF730-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF730/ZNF730-202-vs-ChipExo_models_ZNF730.bestfold.profile.pattern_9.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_0.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_1.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF527/ZNF527-201-vs-ChipExo_models_ZNF527.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_72.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_0.n_72.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_71.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_1.n_71.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_2.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_3.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF525-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF525/ZNF525-201-vs-ChipExo_models_ZNF525.bestfold.profile.pattern_4.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_410.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_410.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_34.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF524/ZNF524-201-vs-Hughes_GR_models_ZNF524.bestfold.profile.pattern_1.n_34.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_925.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_0.n_925.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_82.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_1.n_82.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_2.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_3.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF480-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF480/ZNF480-201-vs-ChipExo_models_ZNF480.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_313.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_0.n_313.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF529/ZNF529-209-vs-ChipExo_models_ZNF529.bestfold.profile.pattern_1.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_731.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_0.n_731.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_68.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF483/ZNF483-201-vs-ChipExo_models_ZNF483.bestfold.profile.pattern_1.n_68.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_0.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_148.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_1.n_148.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_2.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_3.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_5.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_6.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF484.bestfold.profile.pattern_8.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF484/ZNF484-202-vs-ChipExo_models_ZNF484.bestfold.profile.pattern_8.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_7936.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_0.n_7936.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_690.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_1.n_690.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_364.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_2.n_364.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_3.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF485/ZNF485-201-vs-ChipExo_models_ZNF485.bestfold.profile.pattern_4.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_125.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_125.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF486/ZNF486-201-vs-ChipExo_models_ZNF486.bestfold.profile.pattern_1.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_67.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_0.n_67.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF487-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF487/ZNF487-201-vs-ChipExo_models_ZNF487.bestfold.profile.pattern_2.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_1.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF132/ZNF132-201-vs-ChipExo_models_ZNF132.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_3859.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_0.n_3859.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3506.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_1.n_3506.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_626.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_2.n_626.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_3.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_74.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_4.n_74.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF133/ZNF133-206-vs-ChipExo_models_ZNF133.bestfold.profile.pattern_5.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_2981.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_0.n_2981.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_176.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_1.n_176.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF134/ZNF134-201-vs-Hughes_GR_models_ZNF134.bestfold.profile.pattern_2.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-201-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_0.n_953.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_1.n_111.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_2.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_3.n_50.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_4.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF135-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF135/ZNF135-202-vs-ChipExo_models_ZNF135.bestfold.profile.pattern_5.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4518.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_4518.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_411.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_1.n_411.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_2.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-ChipExo_models_ZNF136.bestfold.profile.pattern_3.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6037.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_0.n_6037.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_10.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_11.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_12.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_13.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_14.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_490.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_1.n_490.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_386.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_2.n_386.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_219.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_3.n_219.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_180.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_4.n_180.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_152.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_5.n_152.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_6.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_94.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_7.n_94.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_8.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_51.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF136/ZNF136-201-vs-Hughes_NB_models_ZNF136.bestfold.profile.pattern_9.n_51.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_0.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_1.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_2.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF311/ZNF311-203-vs-ChipExo_models_ZNF311.bestfold.profile.pattern_3.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4055.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_0.n_4055.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2368.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_1.n_2368.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_1347.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_2.n_1347.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_319.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_3.n_319.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_163.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_4.n_163.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_46.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_5.n_46.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_6.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-ChipExo_models_ZNF317.bestfold.profile.pattern_7.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2327.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_0.n_2327.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1763.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_1.n_1763.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_2.n_112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_70.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_3.n_70.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_65.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_4.n_65.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_26.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF317/ZNF317-201-vs-Hughes_NB_models_ZNF317.bestfold.profile.pattern_5.n_26.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_211.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_211.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_190.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_1.n_190.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF254.bestfold.profile.pattern_2.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF254/ZNF254-202-vs-ChipExo_models_ZNF254.bestfold.profile.pattern_2.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_835.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_0.n_835.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_156.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_1.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_38.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF257/ZNF257-201-vs-Hughes_GR_models_ZNF257.bestfold.profile.pattern_2.n_38.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_8686.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_8686.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_5420.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_1.n_5420.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_442.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_2.n_442.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_280.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_3.n_280.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_245.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_4.n_245.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_234.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_5.n_234.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_179.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/FEZF1/FEZF1-202-vs-Hughes_GR_models_FEZF1.bestfold.profile.pattern_6.n_179.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_117.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_0.n_117.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_10.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_11.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_1.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_85.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_2.n_85.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_3.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_62.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_4.n_62.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_5.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_55.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_6.n_55.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_54.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_7.n_54.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_8.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_48.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF557/ZNF557-201-vs-ChipExo_models_ZNF557.bestfold.profile.pattern_9.n_48.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3238.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_3238.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2591.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_1.n_2591.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2515.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_2.n_2515.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_1885.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_3.n_1885.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1109.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_4.n_1109.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_365.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_5.n_365.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_61.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF554/ZNF554-201-vs-Hughes_GR_models_ZNF554.bestfold.profile.pattern_6.n_61.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_158.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_0.n_158.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_97.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_1.n_97.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_78.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_2.n_78.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_3.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_4.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_5.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_6.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_7.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_8.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF555/ZNF555-201-vs-ChipExo_models_ZNF555.bestfold.profile.pattern_9.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_121.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_0.n_121.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_43.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF552/ZNF552-201-vs-ChipExo_models_ZNF552.bestfold.profile.pattern_1.n_43.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_98.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_98.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_1.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_41.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_2.n_41.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_3.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_4.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_6.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_6.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF419.bestfold.profile.pattern_7.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF419/ZNF419-201-vs-ChipExo_models_ZNF419.bestfold.profile.pattern_7.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_167.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_0.n_167.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_156.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_1.n_156.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_101.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_2.n_101.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_96.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_3.n_96.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_80.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_4.n_80.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_57.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_5.n_57.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_6.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-ChipExo_models_ZNF418.bestfold.profile.pattern_7.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_115.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_115.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_108.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_1.n_108.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_64.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_2.n_64.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_44.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_3.n_44.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_4.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_36.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_5.n_36.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZNF418.bestfold.profile.pattern_6.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF418/ZNF418-201-vs-Hughes_GR_models_ZNF418.bestfold.profile.pattern_6.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1112.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_1112.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_69.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_1.n_69.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_53.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_2.n_53.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_3.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_4.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF417/ZNF417-201-vs-ChipExo_models_ZNF417.bestfold.profile.pattern_5.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_534.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_0.n_534.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_266.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_1.n_266.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_2.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_27.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF416/ZNF416-201-vs-Hughes_NB_models_ZNF416.bestfold.profile.pattern_3.n_27.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-201-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_1.n_32.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_2.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_3.n_31.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_4.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_5.n_29.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_6.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF415/ZNF415-224-vs-Hughes_NB_models_ZNF415.bestfold.profile.pattern_7.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_195.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_0.n_195.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_33.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_10.n_33.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_11.n_30.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_11.n_30.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_12.n_25.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_12.n_25.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_13.n_23.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_13.n_23.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_14.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_14.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_114.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_1.n_114.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_63.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_2.n_63.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_52.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_3.n_52.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_49.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_4.n_49.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_5.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_42.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_6.n_42.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_39.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_7.n_39.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_37.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_8.n_37.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_35.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF558/ZNF558-201-vs-ChipExo_models_ZNF558.bestfold.profile.pattern_9.n_35.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_58.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_0.n_58.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_1.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_2.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_3.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF791.bestfold.profile.pattern_4.n_20.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF791/ZNF791-201-vs-ChipExo_models_ZNF791.bestfold.profile.pattern_4.n_20.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_2811.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_0.n_2811.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_962.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_1.n_962.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_708.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_2.n_708.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_286.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_3.n_286.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_45.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_4.n_45.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF169/ZNF169-202-vs-ChipExo_models_ZNF169.bestfold.profile.pattern_5.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_95.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_0.n_95.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324B-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_60.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF324B/ZNF324B-201-vs-ChipExo_models_ZNF324B.bestfold.profile.pattern_1.n_60.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-201-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_1660.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_1.n_513.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/MYNN/MYNN-204-vs-Hughes_GR_models_MYNN.bestfold.profile.pattern_2.n_142.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_181.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_0.n_181.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_137.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_1.n_137.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_86.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_2.n_86.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_40.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_3.n_40.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_24.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_4.n_24.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_5.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF799-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZNF799/ZNF799-201-vs-ChipExo_models_ZNF799.bestfold.profile.pattern_6.n_21.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_8444.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_8444.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_205.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_1.n_205.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_22.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZBTB42/ZBTB42-201-vs-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_2.n_22.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.CWM
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZSCAN30-201/results.PFM.meme TFMoDiSCOtoMEME-files-ZNF-GR-NB-test_encode_fold0/Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.CWM.meme motif-alignments-all-vs-all-test_encode_fold0/ZSCAN30/ZSCAN30-201-vs-Hughes_GR_models_ZSCAN30.bestfold.profile.pattern_0.n_28.CWM