/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-222.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-222.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-222.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-223.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-223.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-223.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-223.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-224.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-224.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-224.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-224.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-225.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-225.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-225.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-225.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-226.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-226.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-226.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-226.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-227.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-227.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-227.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-227.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-222.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-222.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-222.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-222.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-222.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-222.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-223.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-223.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-223.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-223.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-224.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-224.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-224.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-224.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-225.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-225.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-225.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-225.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-226.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-226.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-226.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-226.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-227.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-227.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-227.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-227.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-222.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-222.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-222.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-223.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-223.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-223.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-223.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/INSM2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/INSM2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/INSM2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/INSM2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF14-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF14-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF14-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF14-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF9-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF9-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF9-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF9-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RLF-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RLF-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RLF-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RLF-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SNAI1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SNAI1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SNAI1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SNAI1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP5-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP5-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP5-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP5-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB12-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB12-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB12-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB12-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB24-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB24-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB24-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB24-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-222.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-222.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-222.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-223.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-223.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-223.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-223.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB39-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB39-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB39-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB39-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB5-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB5-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB5-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB5-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB6-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB6-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB6-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB6-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-222.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-222.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-222.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-223.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-223.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-223.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-223.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-224.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-224.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-224.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-224.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-225.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-225.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-225.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-225.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-222.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-222.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-222.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-223.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-223.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-223.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-223.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-224.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-224.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-224.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-224.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-225.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-225.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-225.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-225.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-226.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-226.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-226.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-226.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-227.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-227.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-227.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-227.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-228.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-228.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-228.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-228.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-229.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-229.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-229.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-229.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-230.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-230.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-230.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-230.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-231.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-231.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-231.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-231.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-232.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-232.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-232.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-232.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-233.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-233.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-233.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-233.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-234.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-234.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-234.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-234.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-235.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-235.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-235.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-235.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-236.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-236.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-236.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-236.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-237.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-237.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-237.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-237.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-238.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-238.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-238.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-238.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-239.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-239.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-239.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-239.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-240.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-240.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-240.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-240.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-241.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-241.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-241.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-241.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-244.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-244.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-244.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-244.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-245.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-245.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-245.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-245.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-246.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-246.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-246.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-246.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-247.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-247.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-247.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-247.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-248.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-248.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-248.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-248.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP3-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP3-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP3-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP3-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP91-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP91-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP91-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP91-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIM3-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIM3-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIM3-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIM3-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF157-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF157-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF157-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF157-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF165-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF165-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF165-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF165-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF22-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF22-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF22-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF22-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF284-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF284-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF284-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF284-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-222.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-222.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-222.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-223.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-223.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-223.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-223.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-224.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-224.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-224.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-224.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-225.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-225.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-225.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-225.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-226.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-226.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-226.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-226.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-227.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-227.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-227.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-227.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-228.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-228.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-228.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-228.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-229.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-229.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-229.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-229.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-230.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-230.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-230.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-230.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-231.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-231.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-231.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-231.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354C-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354C-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354C-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354C-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF367-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF367-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF367-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF367-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-222.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-222.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-222.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-223.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-223.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-223.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-223.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-224.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-224.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-224.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-224.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-225.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-225.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-225.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-225.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-226.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-226.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-226.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-226.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF416-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF416-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF416-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF416-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF492-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF492-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF492-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF492-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512B-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512B-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512B-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512B-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF543-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF543-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF543-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF543-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF572-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF572-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF572-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF572-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF579-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF579-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF579-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF579-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF597-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF597-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF597-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF597-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF629-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF629-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF629-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF629-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF670-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF670-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF670-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF670-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-222.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-222.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-222.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-223.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-223.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-223.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-223.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-224.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-224.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-224.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-224.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-225.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-225.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-225.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-225.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-226.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-226.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-226.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-226.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-227.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-227.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-227.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-227.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-228.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-228.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-228.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-228.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-229.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-229.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-229.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-229.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-230.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-230.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-230.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-230.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF697-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF697-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF697-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF697-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF703-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF703-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF703-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF703-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF705G-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF705G-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF705G-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF705G-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-220.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-220.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-220.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-221.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-221.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-221.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-222.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-222.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-222.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-223.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-223.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-223.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-223.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-224.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-224.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-224.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-224.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-225.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-225.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-225.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-225.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-226.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-226.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-226.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-226.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-227.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-227.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-227.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-227.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-228.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-228.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-228.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-228.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-229.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-229.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-229.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-229.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF716-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF716-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF716-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF716-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF777-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF777-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF777-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF777-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF8-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF8-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF8-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF8-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF891-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF891-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF891-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF891-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN16-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN16-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN16-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN16-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN22-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN22-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN22-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN22-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-218.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-218.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-218.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-219.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-219.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-219.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-205.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-205.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-205.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-206.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-206.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-206.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-207.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-207.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-207.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-208.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-208.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-208.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-209.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-209.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-209.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-210.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-210.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-210.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-211.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-211.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-211.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-212.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-212.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-212.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-213.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-213.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-213.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-214.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-214.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-214.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-215.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-215.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-215.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-216.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-216.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-216.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-217.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-217.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-217.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDB-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDB-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDB-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDB-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-201.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-201.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-201.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-202.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-202.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-202.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-203.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-203.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-203.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-204.Pfam32 --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-204.Pfam32.dom --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-204.Pfam32.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-204.fa