# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-BED PF02892.15 ZBED1-201 - 6.1e-16 58.2 1.0 1.3e-15 57.1 1.0 1.6 1 0 0 1 1 1 1 BED zinc finger Dimer_Tnp_hAT PF05699.14 ZBED1-201 - 2.9e-15 55.8 0.1 9.2e-15 54.2 0.0 1.9 2 0 0 2 2 2 1 hAT family C-terminal dimerisation region # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-BED PF02892.15 ZBED1-202 - 6.1e-16 58.2 1.0 1.3e-15 57.1 1.0 1.6 1 0 0 1 1 1 1 BED zinc finger Dimer_Tnp_hAT PF05699.14 ZBED1-202 - 2.9e-15 55.8 0.1 9.2e-15 54.2 0.0 1.9 2 0 0 2 2 2 1 hAT family C-terminal dimerisation region # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-BED PF02892.15 ZBED1-203 - 6.1e-16 58.2 1.0 1.3e-15 57.1 1.0 1.6 1 0 0 1 1 1 1 BED zinc finger Dimer_Tnp_hAT PF05699.14 ZBED1-203 - 2.9e-15 55.8 0.1 9.2e-15 54.2 0.0 1.9 2 0 0 2 2 2 1 hAT family C-terminal dimerisation region # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-BED PF02892.15 ZBED4-201 - 2.8e-64 212.9 27.8 5.9e-16 58.2 1.0 4.6 4 0 0 4 4 4 4 BED zinc finger Dimer_Tnp_hAT PF05699.14 ZBED4-201 - 5e-08 32.6 0.0 2e-07 30.7 0.0 2.1 1 0 0 1 1 1 1 hAT family C-terminal dimerisation region # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBED5-206.fa # 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Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB25-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- BTB PF00651.31 ZBTB34-201 - 7e-26 90.6 0.2 1.2e-25 89.9 0.2 1.4 1 0 0 1 1 1 1 BTB/POZ domain zf-C2H2 PF00096.26 ZBTB34-201 - 9.8e-17 60.4 16.9 4.2e-05 23.8 2.1 3.9 3 0 0 3 3 3 3 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 ZBTB34-201 - 4.8e-15 55.2 15.5 2.3e-07 30.9 0.6 4.5 4 0 0 4 4 4 2 Zinc-finger double domain zf-C2H2_4 PF13894.6 ZBTB34-201 - 1.7e-11 43.9 18.9 0.00041 21.0 0.3 4.3 4 0 0 4 4 3 3 C2H2-type zinc finger zf-met PF12874.7 ZBTB34-201 - 1.8e-08 34.5 7.2 0.0048 17.3 0.2 3.8 3 0 0 3 3 3 2 Zinc-finger of C2H2 type # 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Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- BTB PF00651.31 ZBTB34-202 - 7.2e-26 90.6 0.2 1.2e-25 89.9 0.2 1.4 1 0 0 1 1 1 1 BTB/POZ domain zf-C2H2 PF00096.26 ZBTB34-202 - 1.1e-16 60.3 16.9 4.3e-05 23.7 2.1 3.9 3 0 0 3 3 3 3 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 ZBTB34-202 - 5.3e-15 55.1 15.5 2.4e-07 30.9 0.6 4.5 4 0 0 4 4 4 2 Zinc-finger double domain zf-C2H2_4 PF13894.6 ZBTB34-202 - 1.9e-11 43.8 18.9 0.00042 20.9 0.3 4.3 4 0 0 4 4 3 3 C2H2-type zinc finger zf-met PF12874.7 ZBTB34-202 - 2e-08 34.3 7.2 0.0049 17.2 0.2 3.8 3 0 0 3 3 3 2 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZBTB34-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf_CCCH_4 PF18345.1 ZC3H8-201 - 2.5e-14 52.8 26.5 7e-08 32.3 2.9 4.1 3 1 0 3 3 3 3 Zinc finger domain zf-CCCH PF00642.24 ZC3H8-201 - 9e-12 44.6 24.5 2.4e-05 24.1 1.5 3.3 3 0 0 3 3 3 3 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH_4 PF18044.1 ZC3H8-201 - 1.7e-11 43.6 24.0 5.3e-06 26.1 1.9 3.4 3 0 0 3 3 3 3 CCCH-type zinc finger zf-CCCH_2 PF14608.6 ZC3H8-201 - 8.3e-07 29.3 22.5 0.0032 17.9 2.2 3.7 3 0 0 3 3 3 3 RNA-binding, Nab2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf_CCCH_4 PF18345.1 ZC3H8-202 - 2.5e-14 52.8 26.5 7e-08 32.3 2.9 4.1 3 1 0 3 3 3 3 Zinc finger domain zf-CCCH PF00642.24 ZC3H8-202 - 3.1e-11 42.9 26.1 2.4e-05 24.1 1.5 3.3 3 0 0 3 3 3 3 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH_4 PF18044.1 ZC3H8-202 - 1.2e-10 40.9 25.6 3.1e-05 23.7 3.1 3.4 3 0 0 3 3 3 3 CCCH-type zinc finger zf-CCCH_2 PF14608.6 ZC3H8-202 - 8.4e-07 29.2 22.5 0.0032 17.9 2.2 3.7 3 0 0 3 3 3 3 RNA-binding, Nab2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf_CCCH_4 PF18345.1 ZC3H8-208 - 2.7e-14 52.7 26.5 6.9e-08 32.3 2.9 4.0 3 1 0 3 3 3 3 Zinc finger domain zf-CCCH PF00642.24 ZC3H8-208 - 9.2e-12 44.6 24.5 2.4e-05 24.1 1.5 3.3 3 0 0 3 3 3 3 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH_4 PF18044.1 ZC3H8-208 - 1.8e-11 43.6 24.0 5.3e-06 26.1 1.9 3.3 3 0 0 3 3 3 3 CCCH-type zinc finger zf-CCCH_2 PF14608.6 ZC3H8-208 - 8.6e-07 29.2 22.5 0.0031 17.9 2.2 3.6 3 0 0 3 3 3 3 RNA-binding, Nab2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZC3H8-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZFAT-201 - 1.1e-39 133.1 129.1 8.6e-08 32.3 0.2 20.3 20 1 0 20 20 20 12 Zinc-finger double domain zf-C2H2 PF00096.26 ZFAT-201 - 1.2e-36 123.1 159.2 7e-05 23.1 3.3 19.4 19 0 0 19 19 19 15 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZFAT-201 - 1.9e-32 109.1 153.7 0.0054 17.5 2.9 19.4 19 0 0 19 19 19 16 C2H2-type zinc finger zf-H2C2_5 PF13909.6 ZFAT-201 - 2.2e-30 104.0 115.7 3.5e-09 36.3 0.2 15.2 16 1 0 16 16 16 9 C2H2-type zinc-finger domain zf-Di19 PF05605.12 ZFAT-201 - 2e-15 56.8 91.4 0.0015 18.8 0.7 12.4 11 1 1 12 12 12 8 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZFAT-202 - 1.6e-40 135.8 128.6 7.9e-08 32.4 0.2 20.4 20 1 0 20 20 20 12 Zinc-finger double domain zf-C2H2 PF00096.26 ZFAT-202 - 7e-37 123.8 159.0 6.4e-05 23.2 3.3 19.4 19 0 0 19 19 19 14 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZFAT-202 - 1.3e-32 109.6 153.4 0.0049 17.6 2.9 19.4 19 0 0 19 19 19 16 C2H2-type zinc finger zf-H2C2_5 PF13909.6 ZFAT-202 - 4.4e-31 106.3 115.1 3.2e-09 36.4 0.2 15.4 16 1 0 16 16 16 9 C2H2-type zinc-finger domain zf-Di19 PF05605.12 ZFAT-202 - 6.7e-15 55.1 92.2 0.0013 18.9 0.7 12.4 11 1 1 12 12 12 8 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_5 PF13909.6 ZFAT-205 - 5.5e-14 51.6 16.1 2.2e-07 30.5 0.2 3.4 3 0 0 3 3 3 3 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 ZFAT-205 - 3.2e-07 30.5 21.4 0.022 15.2 0.3 3.5 3 0 0 3 3 3 3 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_5 PF13909.6 ZFAT-206 - 1.1e-08 34.6 21.8 4.3e-05 23.2 7.6 3.3 3 0 0 3 3 3 2 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZFAT-207 - 8.8e-40 133.4 129.1 8.5e-08 32.3 0.2 20.3 20 1 0 20 20 20 12 Zinc-finger double domain zf-C2H2 PF00096.26 ZFAT-207 - 2.6e-36 122.0 159.0 6.9e-05 23.1 3.3 19.4 19 0 0 19 19 19 15 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZFAT-207 - 4.8e-32 107.9 153.4 0.0053 17.5 2.9 19.4 19 0 0 19 19 19 16 C2H2-type zinc finger zf-H2C2_5 PF13909.6 ZFAT-207 - 1.9e-30 104.2 115.7 3.4e-09 36.3 0.2 15.3 16 1 0 16 16 16 9 C2H2-type zinc-finger domain zf-Di19 PF05605.12 ZFAT-207 - 1.5e-14 54.0 92.2 0.0014 18.8 0.7 12.4 11 1 1 12 12 12 8 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZFAT-208 - 1.3e-40 136.1 128.6 7.8e-08 32.4 0.2 20.4 20 1 0 20 20 20 12 Zinc-finger double domain zf-C2H2 PF00096.26 ZFAT-208 - 5.7e-37 124.1 159.0 6.4e-05 23.2 3.3 19.4 19 0 0 19 19 19 14 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZFAT-208 - 1e-32 109.9 153.4 0.0049 17.6 2.9 19.4 19 0 0 19 19 19 16 C2H2-type zinc finger zf-H2C2_5 PF13909.6 ZFAT-208 - 3.6e-31 106.5 115.0 3.2e-09 36.4 0.2 15.4 16 1 0 16 16 16 9 C2H2-type zinc-finger domain zf-Di19 PF05605.12 ZFAT-208 - 5.7e-15 55.3 92.2 0.0013 19.0 0.7 12.4 11 1 1 12 12 12 8 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZFAT-209 - 8.8e-40 133.4 129.1 8.5e-08 32.3 0.2 20.3 20 1 0 20 20 20 12 Zinc-finger double domain zf-C2H2 PF00096.26 ZFAT-209 - 2.6e-36 122.0 159.0 6.9e-05 23.1 3.3 19.4 19 0 0 19 19 19 15 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZFAT-209 - 4.8e-32 107.9 153.4 0.0053 17.5 2.9 19.4 19 0 0 19 19 19 16 C2H2-type zinc finger zf-H2C2_5 PF13909.6 ZFAT-209 - 1.9e-30 104.2 115.7 3.4e-09 36.3 0.2 15.3 16 1 0 16 16 16 9 C2H2-type zinc-finger domain zf-Di19 PF05605.12 ZFAT-209 - 1.5e-14 54.0 92.2 0.0014 18.8 0.7 12.4 11 1 1 12 12 12 8 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZFAT-213 - 1.2e-21 75.8 98.7 4.5e-05 23.7 3.3 12.4 12 0 0 12 12 12 11 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 ZFAT-213 - 2.5e-21 75.1 85.1 5.6e-08 32.9 0.2 13.6 13 1 0 13 13 13 6 Zinc-finger double domain zf-C2H2_4 PF13894.6 ZFAT-213 - 2.8e-19 68.1 94.8 0.0035 18.1 2.9 12.5 12 0 0 12 12 12 10 C2H2-type zinc finger zf-H2C2_5 PF13909.6 ZFAT-213 - 2.7e-16 59.0 66.9 2.3e-09 36.9 0.2 10.0 11 0 0 11 11 11 4 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZFAT-215 - 1.1e-39 133.1 109.8 6.7e-08 32.6 0.2 17.8 17 1 0 17 17 17 10 Zinc-finger double domain zf-C2H2 PF00096.26 ZFAT-215 - 6.6e-36 120.8 135.7 5.5e-05 23.4 3.3 17.4 17 0 0 17 17 17 12 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZFAT-215 - 9e-33 110.1 130.9 0.0042 17.8 2.9 17.4 17 0 0 17 17 17 15 C2H2-type zinc finger zf-H2C2_5 PF13909.6 ZFAT-215 - 2.1e-26 91.3 100.4 2.7e-09 36.6 0.2 13.7 15 1 0 15 15 15 7 C2H2-type zinc-finger domain zf-Di19 PF05605.12 ZFAT-215 - 4.1e-16 59.0 78.8 0.0011 19.2 0.7 10.5 9 1 1 10 10 10 7 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZFAT-216 - 2.5e-40 135.1 128.6 8.1e-08 32.4 0.2 20.3 20 1 0 20 20 20 12 Zinc-finger double domain zf-C2H2 PF00096.26 ZFAT-216 - 4.2e-37 124.6 159.2 6.6e-05 23.1 3.3 19.4 19 0 0 19 19 19 14 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZFAT-216 - 6.5e-33 110.6 153.7 0.0051 17.6 2.9 19.4 19 0 0 19 19 19 16 C2H2-type zinc finger zf-H2C2_5 PF13909.6 ZFAT-216 - 9.7e-31 105.2 115.7 3.3e-09 36.3 0.2 15.3 16 1 0 16 16 16 9 C2H2-type zinc-finger domain zf-Di19 PF05605.12 ZFAT-216 - 9.7e-16 57.8 91.4 0.0014 18.9 0.7 12.4 11 1 1 12 12 12 8 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZFAT-217 - 8.8e-40 133.4 129.1 8.5e-08 32.3 0.2 20.3 20 1 0 20 20 20 12 Zinc-finger double domain zf-C2H2 PF00096.26 ZFAT-217 - 2.6e-36 122.0 159.0 6.9e-05 23.1 3.3 19.4 19 0 0 19 19 19 15 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZFAT-217 - 4.8e-32 107.9 153.4 0.0053 17.5 2.9 19.4 19 0 0 19 19 19 16 C2H2-type zinc finger zf-H2C2_5 PF13909.6 ZFAT-217 - 1.9e-30 104.2 115.7 3.4e-09 36.3 0.2 15.3 16 1 0 16 16 16 9 C2H2-type zinc-finger domain zf-Di19 PF05605.12 ZFAT-217 - 1.5e-14 54.0 92.2 0.0014 18.8 0.7 12.4 11 1 1 12 12 12 8 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFAT-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZFHX3-201 - 1.6e-66 220.0 19.5 1.9e-17 62.9 0.7 5.0 4 0 0 4 4 4 4 Homeodomain zf-C2H2 PF00096.26 ZFHX3-201 - 7.6e-14 51.3 156.3 0.005 17.2 0.4 22.9 24 0 0 24 24 23 12 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZFHX3-201 - 1.3e-13 50.6 144.7 0.11 13.4 3.7 23.3 24 0 0 24 24 23 13 C2H2-type zinc finger Homeobox_KN PF05920.11 ZFHX3-201 - 9e-11 41.5 2.2 0.036 14.0 0.1 4.8 4 0 0 4 4 4 3 Homeobox KN domain zf-met PF12874.7 ZFHX3-201 - 4e-07 30.2 112.0 0.0004 20.7 0.9 18.1 18 0 0 18 18 18 8 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZFHX3-203 - 4.4e-67 221.8 19.5 1.4e-17 63.3 0.7 5.0 4 0 0 4 4 4 4 Homeodomain zf-C2H2_4 PF13894.6 ZFHX3-203 - 6.9e-13 48.2 106.3 0.077 13.9 3.7 17.8 18 0 0 18 18 18 10 C2H2-type zinc finger Homeobox_KN PF05920.11 ZFHX3-203 - 2.2e-11 43.5 2.0 0.027 14.4 0.1 4.9 4 0 0 4 4 4 3 Homeobox KN domain zf-C2H2 PF00096.26 ZFHX3-203 - 4.8e-11 42.5 114.2 0.0037 17.7 0.4 17.6 18 0 0 18 18 18 9 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZFHX3-208 - 1.6e-66 220.0 19.5 1.9e-17 62.9 0.7 5.0 4 0 0 4 4 4 4 Homeodomain zf-C2H2 PF00096.26 ZFHX3-208 - 7.6e-14 51.3 156.3 0.005 17.2 0.4 22.9 24 0 0 24 24 23 12 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZFHX3-208 - 1.3e-13 50.6 144.7 0.11 13.4 3.7 23.3 24 0 0 24 24 23 13 C2H2-type zinc finger Homeobox_KN PF05920.11 ZFHX3-208 - 9e-11 41.5 2.2 0.036 14.0 0.1 4.8 4 0 0 4 4 4 3 Homeobox KN domain zf-met PF12874.7 ZFHX3-208 - 4e-07 30.2 112.0 0.0004 20.7 0.9 18.1 18 0 0 18 18 18 8 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:35 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFHX3-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZFP30-201 - 6.8e-93 301.3 104.9 5.9e-09 36.0 0.4 14.2 14 0 0 14 14 14 13 Zinc-finger double domain zf-C2H2 PF00096.26 ZFP30-201 - 1e-59 195.7 104.6 3.1e-05 24.2 3.6 13.4 13 0 0 13 13 13 12 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZFP30-201 - 2e-30 102.8 100.8 0.01 16.6 0.9 13.3 13 0 0 13 13 13 13 C2H2-type zinc finger KRAB PF01352.27 ZFP30-201 - 1.7e-23 81.9 1.6 4.3e-23 80.7 1.6 1.7 1 0 0 1 1 1 1 KRAB box zf-C2H2_6 PF13912.6 ZFP30-201 - 1.4e-19 69.6 96.5 0.022 14.7 1.5 13.8 13 0 0 13 13 13 12 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZFP30-201 - 1.5e-13 50.6 85.5 0.0016 18.5 4.0 10.0 3 2 10 13 13 13 11 Zinc ribbon domain C1_4 PF07975.12 ZFP30-201 - 1e-08 35.3 66.5 0.17 12.1 7.4 10.0 2 2 6 10 10 10 4 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZFP30-202 - 6e-26 89.8 0.7 7.5e-26 89.5 0.7 1.1 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZFP30-203 - 6.8e-93 301.3 104.9 5.9e-09 36.0 0.4 14.2 14 0 0 14 14 14 13 Zinc-finger double domain zf-C2H2 PF00096.26 ZFP30-203 - 1e-59 195.7 104.6 3.1e-05 24.2 3.6 13.4 13 0 0 13 13 13 12 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZFP30-203 - 2e-30 102.8 100.8 0.01 16.6 0.9 13.3 13 0 0 13 13 13 13 C2H2-type zinc finger KRAB PF01352.27 ZFP30-203 - 1.7e-23 81.9 1.6 4.3e-23 80.7 1.6 1.7 1 0 0 1 1 1 1 KRAB box zf-C2H2_6 PF13912.6 ZFP30-203 - 1.4e-19 69.6 96.5 0.022 14.7 1.5 13.8 13 0 0 13 13 13 12 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZFP30-203 - 1.5e-13 50.6 85.5 0.0016 18.5 4.0 10.0 3 2 10 13 13 13 11 Zinc ribbon domain C1_4 PF07975.12 ZFP30-203 - 1e-08 35.3 66.5 0.17 12.1 7.4 10.0 2 2 6 10 10 10 4 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZFP30-204.fa # 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Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- G-patch PF01585.23 ZGPAT-206 - 3.6e-12 46.0 0.1 9.2e-12 44.7 0.1 1.7 1 0 0 1 1 1 1 G-patch domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-207.fa # 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Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-CCCH_4 PF18044.1 ZGPAT-209 - 7e-07 28.9 5.1 1e-06 28.3 5.1 1.3 1 0 0 1 1 1 1 CCCH-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-CCCH_4 PF18044.1 ZGPAT-210 - 3.5e-07 29.9 5.1 5.5e-07 29.2 5.1 1.3 1 0 0 1 1 1 1 CCCH-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZGPAT-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZHX1-201 - 4.1e-35 119.4 14.7 5.6e-07 29.3 0.0 5.4 5 0 0 5 5 5 5 Homeodomain zf_C2H2_ZHX PF18387.1 ZHX1-201 - 4.7e-24 83.8 0.4 4.7e-24 83.8 0.4 2.7 3 0 0 3 3 3 1 Zinc-fingers and homeoboxes C2H2 finger domain Homez PF11569.8 ZHX1-201 - 5.8e-21 73.7 6.7 9.7e-12 44.2 0.3 5.4 5 0 0 5 5 5 5 Homeodomain leucine-zipper encoding, Homez Homeobox_KN PF05920.11 ZHX1-201 - 1.2e-18 66.6 9.1 0.00053 19.8 0.1 5.8 5 0 0 5 5 5 5 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZHX1-202 - 4.1e-35 119.4 14.7 5.6e-07 29.3 0.0 5.4 5 0 0 5 5 5 5 Homeodomain zf_C2H2_ZHX PF18387.1 ZHX1-202 - 4.7e-24 83.8 0.4 4.7e-24 83.8 0.4 2.7 3 0 0 3 3 3 1 Zinc-fingers and homeoboxes C2H2 finger domain Homez PF11569.8 ZHX1-202 - 5.8e-21 73.7 6.7 9.7e-12 44.2 0.3 5.4 5 0 0 5 5 5 5 Homeodomain leucine-zipper encoding, Homez Homeobox_KN PF05920.11 ZHX1-202 - 1.2e-18 66.6 9.1 0.00053 19.8 0.1 5.8 5 0 0 5 5 5 5 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZHX1-206 - 4.1e-35 119.4 14.7 5.6e-07 29.3 0.0 5.4 5 0 0 5 5 5 5 Homeodomain zf_C2H2_ZHX PF18387.1 ZHX1-206 - 4.7e-24 83.8 0.4 4.7e-24 83.8 0.4 2.7 3 0 0 3 3 3 1 Zinc-fingers and homeoboxes C2H2 finger domain Homez PF11569.8 ZHX1-206 - 5.8e-21 73.7 6.7 9.7e-12 44.2 0.3 5.4 5 0 0 5 5 5 5 Homeodomain leucine-zipper encoding, Homez Homeobox_KN PF05920.11 ZHX1-206 - 1.2e-18 66.6 9.1 0.00053 19.8 0.1 5.8 5 0 0 5 5 5 5 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZHX2-201 - 2.4e-25 88.2 13.0 1.4e-06 28.0 0.2 4.6 4 0 0 4 4 4 4 Homeodomain zf_C2H2_ZHX PF18387.1 ZHX2-201 - 5.3e-25 86.8 2.4 1.2e-23 82.5 0.3 2.5 2 0 0 2 2 2 1 Zinc-fingers and homeoboxes C2H2 finger domain Homeobox_KN PF05920.11 ZHX2-201 - 5.4e-15 55.0 7.1 0.0026 17.6 0.0 4.8 4 0 0 4 4 4 4 Homeobox KN domain Homez PF11569.8 ZHX2-201 - 8.1e-07 28.4 4.4 0.37 10.3 0.1 5.3 5 0 0 5 5 5 2 Homeodomain leucine-zipper encoding, Homez # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZHX3-201 - 1.3e-33 114.6 15.3 8.1e-08 32.0 0.5 5.4 5 0 0 5 5 5 5 Homeodomain Homez PF11569.8 ZHX3-201 - 1.6e-25 88.3 9.4 1.6e-15 56.3 1.4 5.0 5 0 0 5 5 5 3 Homeodomain leucine-zipper encoding, Homez zf_C2H2_ZHX PF18387.1 ZHX3-201 - 6.1e-23 80.2 0.2 6.1e-23 80.2 0.2 1.9 2 0 0 2 2 2 1 Zinc-fingers and homeoboxes C2H2 finger domain Homeobox_KN PF05920.11 ZHX3-201 - 5.7e-18 64.5 13.5 0.0031 17.4 0.1 5.9 6 0 0 6 6 6 5 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZHX3-204 - 1.5e-34 117.6 15.3 5.2e-08 32.6 0.5 5.4 5 0 0 5 5 5 5 Homeodomain Homez PF11569.8 ZHX3-204 - 3e-26 90.7 9.7 1e-15 56.9 1.4 5.0 5 0 0 5 5 5 4 Homeodomain leucine-zipper encoding, Homez Homeobox_KN PF05920.11 ZHX3-204 - 4.3e-20 71.3 8.6 0.002 18.0 0.1 5.4 5 0 0 5 5 5 5 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZHX3-205 - 1.3e-33 114.6 15.3 8.1e-08 32.0 0.5 5.4 5 0 0 5 5 5 5 Homeodomain Homez PF11569.8 ZHX3-205 - 1.6e-25 88.3 9.4 1.6e-15 56.3 1.4 5.0 5 0 0 5 5 5 3 Homeodomain leucine-zipper encoding, Homez zf_C2H2_ZHX PF18387.1 ZHX3-205 - 6.1e-23 80.2 0.2 6.1e-23 80.2 0.2 1.9 2 0 0 2 2 2 1 Zinc-fingers and homeoboxes C2H2 finger domain Homeobox_KN PF05920.11 ZHX3-205 - 5.7e-18 64.5 13.5 0.0031 17.4 0.1 5.9 6 0 0 6 6 6 5 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZHX3-211 - 3.9e-29 100.3 15.6 8.2e-08 32.0 0.5 5.4 5 0 0 5 5 5 4 Homeodomain zf_C2H2_ZHX PF18387.1 ZHX3-211 - 6.2e-23 80.2 0.2 6.2e-23 80.2 0.2 1.9 2 0 0 2 2 2 1 Zinc-fingers and homeoboxes C2H2 finger domain Homez PF11569.8 ZHX3-211 - 3.4e-17 61.6 10.8 2e-07 30.4 1.9 5.1 5 0 0 5 5 5 3 Homeodomain leucine-zipper encoding, Homez Homeobox_KN PF05920.11 ZHX3-211 - 2.2e-14 53.1 13.5 0.0031 17.4 0.1 5.8 6 0 0 6 6 6 4 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf_C2H2_ZHX PF18387.1 ZHX3-212 - 1.4e-23 82.3 0.2 1.4e-23 82.3 0.2 2.1 2 0 0 2 2 2 1 Zinc-fingers and homeoboxes C2H2 finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZHX3-214 - 1.3e-33 114.6 15.3 8.1e-08 32.0 0.5 5.4 5 0 0 5 5 5 5 Homeodomain Homez PF11569.8 ZHX3-214 - 1.6e-25 88.3 9.4 1.6e-15 56.3 1.4 5.0 5 0 0 5 5 5 3 Homeodomain leucine-zipper encoding, Homez zf_C2H2_ZHX PF18387.1 ZHX3-214 - 6.1e-23 80.2 0.2 6.1e-23 80.2 0.2 1.9 2 0 0 2 2 2 1 Zinc-fingers and homeoboxes C2H2 finger domain Homeobox_KN PF05920.11 ZHX3-214 - 5.7e-18 64.5 13.5 0.0031 17.4 0.1 5.9 6 0 0 6 6 6 5 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:33 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Homeodomain PF00046.29 ZHX3-217 - 1.3e-33 114.6 15.3 8.1e-08 32.0 0.5 5.4 5 0 0 5 5 5 5 Homeodomain Homez PF11569.8 ZHX3-217 - 1.6e-25 88.3 9.4 1.6e-15 56.3 1.4 5.0 5 0 0 5 5 5 3 Homeodomain leucine-zipper encoding, Homez zf_C2H2_ZHX PF18387.1 ZHX3-217 - 6.1e-23 80.2 0.2 6.1e-23 80.2 0.2 1.9 2 0 0 2 2 2 1 Zinc-fingers and homeoboxes C2H2 finger domain Homeobox_KN PF05920.11 ZHX3-217 - 5.7e-18 64.5 13.5 0.0031 17.4 0.1 5.9 6 0 0 6 6 6 5 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf_C2H2_ZHX PF18387.1 ZHX3-218 - 1.4e-23 82.3 0.2 1.4e-23 82.3 0.2 2.1 2 0 0 2 2 2 1 Zinc-fingers and homeoboxes C2H2 finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZHX3-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZKSCAN8-201 - 5.3e-74 241.6 44.5 1.6e-08 34.6 0.1 10.3 10 0 0 10 10 10 9 Zinc-finger double domain zf-C2H2 PF00096.26 ZKSCAN8-201 - 9.4e-59 192.7 49.5 1.3e-06 28.5 0.3 9.4 9 0 0 9 9 9 9 Zinc finger, C2H2 type SCAN PF02023.17 ZKSCAN8-201 - 1.9e-37 127.0 5.6 4.8e-37 125.7 5.6 1.7 1 0 0 1 1 1 1 SCAN domain zf-C2H2_4 PF13894.6 ZKSCAN8-201 - 1.4e-33 112.6 48.9 0.0011 19.6 0.7 9.4 9 0 0 9 9 9 9 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZKSCAN8-201 - 6.5e-20 70.6 52.2 0.00021 21.2 1.5 9.4 9 0 0 9 9 9 8 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZKSCAN8-201 - 6.9e-13 48.5 37.3 0.0015 18.6 1.0 6.6 4 4 3 7 7 7 5 Zinc ribbon domain KRAB PF01352.27 ZKSCAN8-201 - 3.9e-11 42.4 0.0 8.3e-11 41.4 0.0 1.5 1 0 0 1 1 1 1 KRAB box zf_UBZ PF18439.1 ZKSCAN8-201 - 2.2e-10 39.9 27.9 3.5 7.3 0.0 9.4 9 0 0 9 9 9 3 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 ZKSCAN8-201 - 8.7e-09 35.0 40.3 0.099 12.4 0.4 8.9 9 0 0 9 9 9 5 zinc-finger C2H2-type XPA_N PF01286.18 ZKSCAN8-201 - 2.6e-08 33.8 40.0 0.23 11.5 0.4 9.5 10 0 0 10 10 9 3 XPA protein N-terminal zf-C2H2_jaz PF12171.8 ZKSCAN8-201 - 3e-07 30.5 24.9 0.05 13.9 0.1 8.3 9 0 0 9 9 8 2 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 ZKSCAN8-201 - 3.8e-07 30.8 28.2 0.033 14.9 1.1 5.3 2 2 3 5 5 5 4 zinc-ribbon family C1_1 PF00130.22 ZKSCAN8-201 - 8.7e-07 28.7 29.1 0.21 11.5 0.3 6.9 1 1 8 9 9 9 6 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZKSCAN8-202 - 5.3e-74 241.6 44.5 1.6e-08 34.6 0.1 10.3 10 0 0 10 10 10 9 Zinc-finger double domain zf-C2H2 PF00096.26 ZKSCAN8-202 - 9.4e-59 192.7 49.5 1.3e-06 28.5 0.3 9.4 9 0 0 9 9 9 9 Zinc finger, C2H2 type SCAN PF02023.17 ZKSCAN8-202 - 1.9e-37 127.0 5.6 4.8e-37 125.7 5.6 1.7 1 0 0 1 1 1 1 SCAN domain zf-C2H2_4 PF13894.6 ZKSCAN8-202 - 1.4e-33 112.6 48.9 0.0011 19.6 0.7 9.4 9 0 0 9 9 9 9 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZKSCAN8-202 - 6.5e-20 70.6 52.2 0.00021 21.2 1.5 9.4 9 0 0 9 9 9 8 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZKSCAN8-202 - 6.9e-13 48.5 37.3 0.0015 18.6 1.0 6.6 4 4 3 7 7 7 5 Zinc ribbon domain KRAB PF01352.27 ZKSCAN8-202 - 3.9e-11 42.4 0.0 8.3e-11 41.4 0.0 1.5 1 0 0 1 1 1 1 KRAB box zf_UBZ PF18439.1 ZKSCAN8-202 - 2.2e-10 39.9 27.9 3.5 7.3 0.0 9.4 9 0 0 9 9 9 3 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 ZKSCAN8-202 - 8.7e-09 35.0 40.3 0.099 12.4 0.4 8.9 9 0 0 9 9 9 5 zinc-finger C2H2-type XPA_N PF01286.18 ZKSCAN8-202 - 2.6e-08 33.8 40.0 0.23 11.5 0.4 9.5 10 0 0 10 10 9 3 XPA protein N-terminal zf-C2H2_jaz PF12171.8 ZKSCAN8-202 - 3e-07 30.5 24.9 0.05 13.9 0.1 8.3 9 0 0 9 9 8 2 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 ZKSCAN8-202 - 3.8e-07 30.8 28.2 0.033 14.9 1.1 5.3 2 2 3 5 5 5 4 zinc-ribbon family C1_1 PF00130.22 ZKSCAN8-202 - 8.7e-07 28.7 29.1 0.21 11.5 0.3 6.9 1 1 8 9 9 9 6 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SCAN PF02023.17 ZKSCAN8-203 - 2.6e-38 129.7 5.6 3.7e-38 129.2 5.6 1.2 1 0 0 1 1 1 1 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZKSCAN8-204 - 5.5e-76 247.9 44.5 1e-08 35.2 0.1 10.2 10 0 0 10 10 10 9 Zinc-finger double domain zf-C2H2 PF00096.26 ZKSCAN8-204 - 1.6e-60 198.3 49.5 8.4e-07 29.1 0.3 9.3 9 0 0 9 9 9 9 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZKSCAN8-204 - 2.4e-35 118.2 48.9 0.00068 20.3 0.7 9.3 9 0 0 9 9 9 9 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZKSCAN8-204 - 8.4e-22 76.7 51.8 0.00013 21.9 1.5 9.4 9 0 0 9 9 9 9 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZKSCAN8-204 - 3.3e-13 49.5 40.2 0.0014 18.7 1.7 6.7 3 3 5 8 8 8 6 Zinc ribbon domain zf_UBZ PF18439.1 ZKSCAN8-204 - 4e-12 45.5 27.6 2.2 7.9 0.0 9.3 9 0 0 9 9 9 3 Ubiquitin-Binding Zinc Finger KRAB PF01352.27 ZKSCAN8-204 - 2.9e-11 42.8 0.0 5e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 KRAB box zf-C2H2_11 PF16622.5 ZKSCAN8-204 - 1.8e-10 40.4 40.3 0.062 13.1 0.4 9.0 9 0 0 9 9 9 5 zinc-finger C2H2-type XPA_N PF01286.18 ZKSCAN8-204 - 9.3e-10 38.4 41.0 0.15 12.2 0.4 9.6 10 0 0 10 10 10 3 XPA protein N-terminal zf-C2H2_jaz PF12171.8 ZKSCAN8-204 - 8.6e-09 35.5 24.9 0.031 14.5 0.1 8.4 9 0 0 9 9 8 2 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 ZKSCAN8-204 - 4.3e-08 33.8 28.5 0.019 15.7 1.1 5.2 2 2 3 5 5 5 4 zinc-ribbon family FYVE PF01363.21 ZKSCAN8-204 - 1.5e-07 31.4 35.4 0.0032 17.6 2.4 5.7 1 1 3 4 4 4 2 FYVE zinc finger C1_1 PF00130.22 ZKSCAN8-204 - 2e-07 30.8 31.3 0.13 12.2 0.4 7.1 1 1 8 9 9 9 6 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_8 PF15909.5 ZKSCAN8-204 - 8.7e-07 29.2 21.4 0.017 15.4 0.3 5.4 1 1 6 7 7 7 5 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZKSCAN8-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-met PF12874.7 ZMAT4-201 - 5.5e-28 96.5 24.5 1.2e-07 31.9 1.9 4.2 4 0 0 4 4 4 4 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 ZMAT4-201 - 3.8e-24 84.4 16.5 4.4e-07 30.0 0.1 4.2 4 0 0 4 4 4 4 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 ZMAT4-201 - 5.1e-08 33.2 11.0 0.013 15.9 0.3 4.0 3 1 1 4 4 4 4 C2H2 type zinc-finger (2 copies) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:29:34 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-met PF12874.7 ZMAT4-202 - 5.4e-21 74.3 20.2 6.7e-08 32.7 1.9 3.2 3 0 0 3 3 3 3 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 ZMAT4-202 - 1.9e-16 59.8 11.9 2e-05 24.8 0.6 3.2 3 0 0 3 3 3 3 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-met PF12874.7 ZMAT4-203 - 4.4e-08 33.2 1.9 4.4e-08 33.2 1.9 1.7 2 0 0 2 2 2 1 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_jaz PF12171.8 ZMAT4-205 - 4.8e-08 33.1 0.1 9.8e-08 32.1 0.1 1.5 1 0 0 1 1 1 1 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 ZMAT4-205 - 3.1e-07 30.6 0.1 6.7e-07 29.5 0.1 1.6 1 0 0 1 1 1 1 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT4-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-CCCH PF00642.24 ZMAT5-201 - 3.4e-08 33.2 1.9 5.4e-08 32.6 1.9 1.3 1 0 0 1 1 1 1 Zinc finger C-x8-C-x5-C-x3-H type (and similar) zf-CCCH_4 PF18044.1 ZMAT5-201 - 4.6e-08 32.7 2.9 8.1e-08 31.9 2.9 1.4 1 0 0 1 1 1 1 CCCH-type zinc finger zf-U1 PF06220.12 ZMAT5-201 - 1.8e-07 30.8 3.9 3.4e-07 29.9 3.9 1.5 1 0 0 1 1 1 1 U1 zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-U1 PF06220.12 ZMAT5-202 - 4.3e-08 32.8 3.9 5.9e-08 32.3 3.9 1.2 1 0 0 1 1 1 1 U1 zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMAT5-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Zmiz1_N PF18028.1 ZMIZ1-201 - 1.5e-47 160.0 0.1 2.5e-47 159.2 0.1 1.4 1 0 0 1 1 1 1 Zmiz1 N-terminal tetratricopeptide repeat domain zf-MIZ PF02891.20 ZMIZ1-201 - 1.5e-21 75.9 1.6 1.5e-21 75.9 1.6 2.2 2 0 0 2 2 2 1 MIZ/SP-RING zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-MIZ PF02891.20 ZMIZ1-202 - 2e-21 75.5 1.3 2e-21 75.5 1.3 2.2 2 0 0 2 2 2 1 MIZ/SP-RING zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Zmiz1_N PF18028.1 ZMIZ1-205 - 1.2e-48 163.4 0.1 1.6e-48 163.1 0.1 1.2 1 0 0 1 1 1 1 Zmiz1 N-terminal tetratricopeptide repeat domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMIZ1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF3504 PF12012.8 ZMYM2-201 - 6.9e-64 214.7 1.5 6.9e-64 214.7 1.5 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3504) zf-FCS PF06467.14 ZMYM2-201 - 2.1e-28 98.0 50.8 1.8e-09 37.3 7.3 4.8 4 0 0 4 4 4 4 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM2-202 - 8.6e-71 233.6 117.0 9e-10 38.3 4.0 10.6 10 0 0 10 10 10 10 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 ZMYM2-202 - 1.7e-63 213.4 1.5 1.7e-63 213.4 1.5 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM2-203 - 8.6e-71 233.6 117.0 9e-10 38.3 4.0 10.6 10 0 0 10 10 10 10 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 ZMYM2-203 - 1.7e-63 213.4 1.5 1.7e-63 213.4 1.5 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM2-204 - 5.1e-36 122.4 33.6 2.4e-10 40.2 4.0 4.4 4 0 0 4 4 4 4 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF3504 PF12012.8 ZMYM2-205 - 4.4e-64 215.3 1.5 4.4e-64 215.3 1.5 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM2-206 - 1.9e-11 43.7 21.8 6e-08 32.5 6.9 2.9 3 1 0 3 3 3 2 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM2-210 - 8.6e-71 233.6 117.0 9e-10 38.3 4.0 10.6 10 0 0 10 10 10 10 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 ZMYM2-210 - 1.7e-63 213.4 1.5 1.7e-63 213.4 1.5 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM2-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM3-201 - 2e-69 229.3 118.3 9.4e-10 38.3 3.0 10.6 10 0 0 10 10 10 10 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 ZMYM3-201 - 1.4e-66 223.4 0.3 3.3e-66 222.2 0.3 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM3-203 - 1.2e-30 105.2 32.6 2.8e-10 40.0 3.0 4.3 4 0 0 4 4 4 4 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM3-204 - 1.2e-30 105.1 32.6 2.8e-10 40.0 3.0 4.3 4 0 0 4 4 4 4 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM3-205 - 1e-69 230.2 118.3 8.7e-10 38.4 3.0 10.5 10 0 0 10 10 10 10 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 ZMYM3-205 - 1.1e-32 113.3 0.2 2.5e-32 112.0 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM3-206 - 2e-69 229.3 118.3 9.5e-10 38.3 3.0 10.6 10 0 0 10 10 10 10 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 ZMYM3-206 - 1.4e-66 223.4 0.3 3.3e-66 222.2 0.3 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM3-207 - 1.8e-69 229.4 118.3 9.4e-10 38.3 3.0 10.6 10 0 0 10 10 10 10 MYM-type Zinc finger with FCS sequence motif DUF3504 PF12012.8 ZMYM3-207 - 1.6e-66 223.3 0.3 3.2e-66 222.3 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3504) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM3-209 - 1.1e-63 210.9 108.9 5e-10 39.1 3.0 9.3 9 0 0 9 9 9 9 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM3-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF3504 PF12012.8 ZMYM4-201 - 1.9e-64 216.5 1.0 1.9e-64 216.5 1.0 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF3504) zf-FCS PF06467.14 ZMYM4-201 - 7.4e-51 169.8 98.2 1e-08 34.9 11.4 10.8 10 0 0 10 10 10 10 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF3504 PF12012.8 ZMYM4-203 - 6.4e-65 218.0 1.0 1.3e-64 217.0 1.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3504) zf-FCS PF06467.14 ZMYM4-203 - 9.3e-49 163.1 84.8 7.8e-09 35.3 11.4 8.7 8 0 0 8 8 8 8 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-FCS PF06467.14 ZMYM4-205 - 2.6e-08 33.6 9.6 2.7e-08 33.6 1.7 2.3 2 0 0 2 2 2 1 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZMYM4-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF160-201 - 1.1e-26 92.2 0.1 1.6e-26 91.7 0.1 1.3 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF160-202 - 6.3e-152 487.9 148.0 2.6e-08 33.9 1.0 21.7 21 0 0 21 21 21 21 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF160-202 - 4.9e-121 388.9 157.2 4.7e-07 29.9 1.0 20.5 20 0 0 20 20 20 20 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF160-202 - 2.5e-59 192.7 146.1 0.0015 19.2 1.8 20.6 20 0 0 20 20 20 20 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZNF160-202 - 6.2e-32 109.0 155.0 0.0076 16.2 1.6 22.6 20 4 0 20 20 20 16 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZNF160-202 - 3.2e-28 97.6 103.9 0.02 15.0 3.0 17.3 6 5 14 20 20 20 17 Zinc ribbon domain zf-C2H2_11 PF16622.5 ZNF160-202 - 4.1e-26 90.4 84.1 0.26 11.1 0.1 20.1 20 0 0 20 20 20 9 zinc-finger C2H2-type KRAB PF01352.27 ZNF160-202 - 1.1e-25 89.0 0.1 1.9e-25 88.2 0.1 1.4 1 0 0 1 1 1 1 KRAB box XPA_N PF01286.18 ZNF160-202 - 1.5e-21 76.1 60.7 6.5 6.9 0.0 20.2 20 0 0 20 20 20 0 XPA protein N-terminal zf_UBZ PF18439.1 ZNF160-202 - 7.4e-18 63.8 79.8 0.76 9.4 0.2 20.1 20 0 0 20 20 20 7 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 ZNF160-202 - 6.6e-15 54.7 76.4 0.1 12.5 1.0 14.6 1 1 17 18 18 18 12 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_15 PF17032.5 ZNF160-202 - 1.4e-11 44.9 83.7 0.18 12.6 2.1 10.8 1 1 14 15 15 15 14 zinc-ribbon family HalOD2 PF18547.1 ZNF160-202 - 3.1e-11 43.0 60.4 0.099 12.6 0.3 13.3 8 6 5 13 13 13 7 Halobacterial output domain 2 C1_4 PF07975.12 ZNF160-202 - 8.9e-09 35.5 86.8 0.029 14.6 1.2 13.8 2 2 9 15 15 15 5 TFIIH C1-like domain HypA PF01155.19 ZNF160-202 - 5.2e-08 32.9 72.3 1.4 9.0 1.2 11.2 1 1 9 10 10 9 5 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FAM178 PF14816.6 ZNF160-202 - 9.7e-07 28.1 15.2 9.9 5.0 0.1 10.2 1 1 10 12 12 12 0 Family of unknown function, FAM178 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF160-203 - 6.3e-152 487.9 148.0 2.6e-08 33.9 1.0 21.7 21 0 0 21 21 21 21 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF160-203 - 4.9e-121 388.9 157.2 4.7e-07 29.9 1.0 20.5 20 0 0 20 20 20 20 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF160-203 - 2.5e-59 192.7 146.1 0.0015 19.2 1.8 20.6 20 0 0 20 20 20 20 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZNF160-203 - 6.2e-32 109.0 155.0 0.0076 16.2 1.6 22.6 20 4 0 20 20 20 16 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZNF160-203 - 3.2e-28 97.6 103.9 0.02 15.0 3.0 17.3 6 5 14 20 20 20 17 Zinc ribbon domain zf-C2H2_11 PF16622.5 ZNF160-203 - 4.1e-26 90.4 84.1 0.26 11.1 0.1 20.1 20 0 0 20 20 20 9 zinc-finger C2H2-type KRAB PF01352.27 ZNF160-203 - 1.1e-25 89.0 0.1 1.9e-25 88.2 0.1 1.4 1 0 0 1 1 1 1 KRAB box XPA_N PF01286.18 ZNF160-203 - 1.5e-21 76.1 60.7 6.5 6.9 0.0 20.2 20 0 0 20 20 20 0 XPA protein N-terminal zf_UBZ PF18439.1 ZNF160-203 - 7.4e-18 63.8 79.8 0.76 9.4 0.2 20.1 20 0 0 20 20 20 7 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 ZNF160-203 - 6.6e-15 54.7 76.4 0.1 12.5 1.0 14.6 1 1 17 18 18 18 12 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_15 PF17032.5 ZNF160-203 - 1.4e-11 44.9 83.7 0.18 12.6 2.1 10.8 1 1 14 15 15 15 14 zinc-ribbon family HalOD2 PF18547.1 ZNF160-203 - 3.1e-11 43.0 60.4 0.099 12.6 0.3 13.3 8 6 5 13 13 13 7 Halobacterial output domain 2 C1_4 PF07975.12 ZNF160-203 - 8.9e-09 35.5 86.8 0.029 14.6 1.2 13.8 2 2 9 15 15 15 5 TFIIH C1-like domain HypA PF01155.19 ZNF160-203 - 5.2e-08 32.9 72.3 1.4 9.0 1.2 11.2 1 1 9 10 10 9 5 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FAM178 PF14816.6 ZNF160-203 - 9.7e-07 28.1 15.2 9.9 5.0 0.1 10.2 1 1 10 12 12 12 0 Family of unknown function, FAM178 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:17 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:33:16 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF160-208 - 6.3e-152 487.9 148.0 2.6e-08 33.9 1.0 21.7 21 0 0 21 21 21 21 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF160-208 - 4.9e-121 388.9 157.2 4.7e-07 29.9 1.0 20.5 20 0 0 20 20 20 20 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF160-208 - 2.5e-59 192.7 146.1 0.0015 19.2 1.8 20.6 20 0 0 20 20 20 20 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZNF160-208 - 6.2e-32 109.0 155.0 0.0076 16.2 1.6 22.6 20 4 0 20 20 20 16 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZNF160-208 - 3.2e-28 97.6 103.9 0.02 15.0 3.0 17.3 6 5 14 20 20 20 17 Zinc ribbon domain zf-C2H2_11 PF16622.5 ZNF160-208 - 4.1e-26 90.4 84.1 0.26 11.1 0.1 20.1 20 0 0 20 20 20 9 zinc-finger C2H2-type KRAB PF01352.27 ZNF160-208 - 1.1e-25 89.0 0.1 1.9e-25 88.2 0.1 1.4 1 0 0 1 1 1 1 KRAB box XPA_N PF01286.18 ZNF160-208 - 1.5e-21 76.1 60.7 6.5 6.9 0.0 20.2 20 0 0 20 20 20 0 XPA protein N-terminal zf_UBZ PF18439.1 ZNF160-208 - 7.4e-18 63.8 79.8 0.76 9.4 0.2 20.1 20 0 0 20 20 20 7 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 ZNF160-208 - 6.6e-15 54.7 76.4 0.1 12.5 1.0 14.6 1 1 17 18 18 18 12 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_15 PF17032.5 ZNF160-208 - 1.4e-11 44.9 83.7 0.18 12.6 2.1 10.8 1 1 14 15 15 15 14 zinc-ribbon family HalOD2 PF18547.1 ZNF160-208 - 3.1e-11 43.0 60.4 0.099 12.6 0.3 13.3 8 6 5 13 13 13 7 Halobacterial output domain 2 C1_4 PF07975.12 ZNF160-208 - 8.9e-09 35.5 86.8 0.029 14.6 1.2 13.8 2 2 9 15 15 15 5 TFIIH C1-like domain HypA PF01155.19 ZNF160-208 - 5.2e-08 32.9 72.3 1.4 9.0 1.2 11.2 1 1 9 10 10 9 5 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FAM178 PF14816.6 ZNF160-208 - 9.7e-07 28.1 15.2 9.9 5.0 0.1 10.2 1 1 10 12 12 12 0 Family of unknown function, FAM178 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:43 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:43 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:43 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF160-214 - 2.1e-152 489.4 148.0 2.5e-08 34.0 1.0 21.7 21 0 0 21 21 21 21 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF160-214 - 1.7e-121 390.3 157.2 4.5e-07 30.0 1.0 20.5 20 0 0 20 20 20 20 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF160-214 - 9.1e-60 194.1 146.2 0.0015 19.2 1.8 20.6 20 0 0 20 20 20 20 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZNF160-214 - 2e-32 110.6 154.9 0.0072 16.3 1.6 22.6 20 4 0 20 20 20 16 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZNF160-214 - 3.1e-28 97.6 105.1 0.019 15.1 3.0 17.3 7 6 13 20 20 20 17 Zinc ribbon domain zf-C2H2_11 PF16622.5 ZNF160-214 - 1.5e-26 91.8 84.1 0.25 11.2 0.1 20.1 20 0 0 20 20 20 9 zinc-finger C2H2-type XPA_N PF01286.18 ZNF160-214 - 5.8e-22 77.4 60.7 6.1 7.0 0.0 20.2 20 0 0 20 20 20 0 XPA protein N-terminal zf_UBZ PF18439.1 ZNF160-214 - 2.8e-18 65.2 79.8 0.72 9.5 0.2 20.1 20 0 0 20 20 20 7 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 ZNF160-214 - 7.7e-15 54.5 77.6 0.094 12.6 0.9 14.7 1 1 18 19 19 19 12 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_15 PF17032.5 ZNF160-214 - 6.7e-12 46.0 83.4 0.18 12.6 2.3 10.8 1 1 12 14 14 14 12 zinc-ribbon family HalOD2 PF18547.1 ZNF160-214 - 2.5e-11 43.3 61.0 0.094 12.6 0.3 13.3 8 6 5 13 13 13 6 Halobacterial output domain 2 C1_4 PF07975.12 ZNF160-214 - 4.8e-09 36.3 86.9 0.025 14.8 1.1 13.9 2 2 11 16 16 16 5 TFIIH C1-like domain HypA PF01155.19 ZNF160-214 - 2.8e-08 33.8 72.1 1.3 9.0 1.2 11.2 1 1 12 13 13 13 4 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FAM178 PF14816.6 ZNF160-214 - 5.4e-07 28.9 15.1 9.4 5.1 0.1 10.3 1 1 10 12 12 12 0 Family of unknown function, FAM178 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:44 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF160-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:45 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF219-201 - 6e-27 92.6 69.9 9.4e-05 22.7 3.3 9.2 9 0 0 9 9 9 7 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF219-201 - 3.1e-22 77.3 71.0 0.0031 18.2 1.7 9.3 9 0 0 9 9 9 8 C2H2-type zinc finger zf-H2C2_2 PF13465.6 ZNF219-201 - 1.3e-12 47.5 78.2 5.7e-08 32.9 2.3 12.1 13 0 0 13 13 12 4 Zinc-finger double domain zf-H2C2_5 PF13909.6 ZNF219-201 - 1.6e-12 46.9 41.2 3.7e-06 26.6 3.3 8.5 8 0 0 8 8 8 4 C2H2-type zinc-finger domain zf-Di19 PF05605.12 ZNF219-201 - 1e-09 38.6 46.6 0.025 14.9 1.0 7.5 6 2 1 7 7 7 6 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:45 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF219-202 - 6e-27 92.6 69.9 9.4e-05 22.7 3.3 9.2 9 0 0 9 9 9 7 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF219-202 - 3.1e-22 77.3 71.0 0.0031 18.2 1.7 9.3 9 0 0 9 9 9 8 C2H2-type zinc finger zf-H2C2_2 PF13465.6 ZNF219-202 - 1.3e-12 47.5 78.2 5.7e-08 32.9 2.3 12.1 13 0 0 13 13 12 4 Zinc-finger double domain zf-H2C2_5 PF13909.6 ZNF219-202 - 1.6e-12 46.9 41.2 3.7e-06 26.6 3.3 8.5 8 0 0 8 8 8 4 C2H2-type zinc-finger domain zf-Di19 PF05605.12 ZNF219-202 - 1e-09 38.6 46.6 0.025 14.9 1.0 7.5 6 2 1 7 7 7 6 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF219-203 - 6e-27 92.6 69.9 9.4e-05 22.7 3.3 9.2 9 0 0 9 9 9 7 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF219-203 - 3.1e-22 77.3 71.0 0.0031 18.2 1.7 9.3 9 0 0 9 9 9 8 C2H2-type zinc finger zf-H2C2_2 PF13465.6 ZNF219-203 - 1.3e-12 47.5 78.2 5.7e-08 32.9 2.3 12.1 13 0 0 13 13 12 4 Zinc-finger double domain zf-H2C2_5 PF13909.6 ZNF219-203 - 1.6e-12 46.9 41.2 3.7e-06 26.6 3.3 8.5 8 0 0 8 8 8 4 C2H2-type zinc-finger domain zf-Di19 PF05605.12 ZNF219-203 - 1e-09 38.6 46.6 0.025 14.9 1.0 7.5 6 2 1 7 7 7 6 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:51 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:51 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:52 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:52 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:52 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF219-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF221-201 - 2.9e-98 318.3 114.1 5.4e-08 32.9 0.4 16.2 16 0 0 16 16 16 16 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF221-201 - 1.9e-53 176.0 134.1 2.4e-06 27.7 2.0 15.4 15 0 0 15 15 15 15 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF221-201 - 3.9e-32 108.2 129.5 0.0029 18.3 1.7 15.4 15 0 0 15 15 15 15 C2H2-type zinc finger KRAB PF01352.27 ZNF221-201 - 5e-23 80.5 0.1 5e-23 80.5 0.1 2.2 2 0 0 2 2 2 1 KRAB box zf-C2H2_jaz PF12171.8 ZNF221-201 - 1.6e-11 44.2 96.8 0.0056 16.9 0.4 14.9 14 1 1 15 15 15 9 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 ZNF221-201 - 2.4e-09 37.1 92.2 0.0073 16.4 3.1 11.1 4 2 8 12 12 12 9 Zinc ribbon domain zf-C2H2_6 PF13912.6 ZNF221-201 - 5.2e-09 35.9 121.3 0.17 11.9 0.4 15.5 15 0 0 15 15 15 7 C2H2-type zinc finger zf_UBZ PF18439.1 ZNF221-201 - 8.6e-09 34.8 82.5 0.014 15.0 1.0 15.3 15 0 0 15 15 15 5 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF221-202 - 2.9e-98 318.3 114.1 5.4e-08 32.9 0.4 16.2 16 0 0 16 16 16 16 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF221-202 - 1.9e-53 176.0 134.1 2.4e-06 27.7 2.0 15.4 15 0 0 15 15 15 15 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF221-202 - 3.9e-32 108.2 129.5 0.0029 18.3 1.7 15.4 15 0 0 15 15 15 15 C2H2-type zinc finger KRAB PF01352.27 ZNF221-202 - 5e-23 80.5 0.1 5e-23 80.5 0.1 2.2 2 0 0 2 2 2 1 KRAB box zf-C2H2_jaz PF12171.8 ZNF221-202 - 1.6e-11 44.2 96.8 0.0056 16.9 0.4 14.9 14 1 1 15 15 15 9 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 ZNF221-202 - 2.4e-09 37.1 92.2 0.0073 16.4 3.1 11.1 4 2 8 12 12 12 9 Zinc ribbon domain zf-C2H2_6 PF13912.6 ZNF221-202 - 5.2e-09 35.9 121.3 0.17 11.9 0.4 15.5 15 0 0 15 15 15 7 C2H2-type zinc finger zf_UBZ PF18439.1 ZNF221-202 - 8.6e-09 34.8 82.5 0.014 15.0 1.0 15.3 15 0 0 15 15 15 5 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF221-204 - 2.9e-98 318.3 114.1 5.4e-08 32.9 0.4 16.2 16 0 0 16 16 16 16 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF221-204 - 1.9e-53 176.0 134.1 2.4e-06 27.7 2.0 15.4 15 0 0 15 15 15 15 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF221-204 - 3.9e-32 108.2 129.5 0.0029 18.3 1.7 15.4 15 0 0 15 15 15 15 C2H2-type zinc finger KRAB PF01352.27 ZNF221-204 - 5e-23 80.5 0.1 5e-23 80.5 0.1 2.2 2 0 0 2 2 2 1 KRAB box zf-C2H2_jaz PF12171.8 ZNF221-204 - 1.6e-11 44.2 96.8 0.0056 16.9 0.4 14.9 14 1 1 15 15 15 9 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 ZNF221-204 - 2.4e-09 37.1 92.2 0.0073 16.4 3.1 11.1 4 2 8 12 12 12 9 Zinc ribbon domain zf-C2H2_6 PF13912.6 ZNF221-204 - 5.2e-09 35.9 121.3 0.17 11.9 0.4 15.5 15 0 0 15 15 15 7 C2H2-type zinc finger zf_UBZ PF18439.1 ZNF221-204 - 8.6e-09 34.8 82.5 0.014 15.0 1.0 15.3 15 0 0 15 15 15 5 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF221-205 - 2.9e-98 318.3 114.1 5.4e-08 32.9 0.4 16.2 16 0 0 16 16 16 16 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF221-205 - 1.9e-53 176.0 134.1 2.4e-06 27.7 2.0 15.4 15 0 0 15 15 15 15 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF221-205 - 3.9e-32 108.2 129.5 0.0029 18.3 1.7 15.4 15 0 0 15 15 15 15 C2H2-type zinc finger KRAB PF01352.27 ZNF221-205 - 5e-23 80.5 0.1 5e-23 80.5 0.1 2.2 2 0 0 2 2 2 1 KRAB box zf-C2H2_jaz PF12171.8 ZNF221-205 - 1.6e-11 44.2 96.8 0.0056 16.9 0.4 14.9 14 1 1 15 15 15 9 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 ZNF221-205 - 2.4e-09 37.1 92.2 0.0073 16.4 3.1 11.1 4 2 8 12 12 12 9 Zinc ribbon domain zf-C2H2_6 PF13912.6 ZNF221-205 - 5.2e-09 35.9 121.3 0.17 11.9 0.4 15.5 15 0 0 15 15 15 7 C2H2-type zinc finger zf_UBZ PF18439.1 ZNF221-205 - 8.6e-09 34.8 82.5 0.014 15.0 1.0 15.3 15 0 0 15 15 15 5 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF221-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF234-201 - 6.9e-136 437.2 150.2 9.9e-09 35.2 1.1 19.5 20 0 0 20 20 19 19 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF234-201 - 8.9e-95 306.2 152.3 1.3e-06 28.5 1.4 19.3 19 0 0 19 19 19 18 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF234-201 - 2.1e-49 161.9 152.2 0.00059 20.5 1.2 18.8 19 0 0 19 19 19 17 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF234-201 - 6e-29 99.7 84.2 0.018 15.3 0.3 17.7 18 0 0 18 18 17 12 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 ZNF234-201 - 1.3e-21 75.9 0.2 2.7e-21 74.9 0.2 1.6 1 0 0 1 1 1 1 KRAB box Zn-ribbon_8 PF09723.10 ZNF234-201 - 4.4e-14 52.3 105.4 0.043 13.9 2.6 13.5 5 3 12 17 17 17 12 Zinc ribbon domain zf_UBZ PF18439.1 ZNF234-201 - 1.2e-13 50.4 96.6 0.34 10.5 0.5 18.0 18 0 0 18 18 18 9 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 ZNF234-201 - 1.6e-10 41.0 131.6 0.15 12.5 0.5 18.1 19 0 0 19 19 19 11 Zinc-finger of C2H2 type XPA_N PF01286.18 ZNF234-201 - 2.1e-10 40.4 88.3 1.7 8.8 0.3 18.2 18 0 0 18 18 18 7 XPA protein N-terminal zf-C2H2_6 PF13912.6 ZNF234-201 - 3.4e-07 30.1 138.1 0.058 13.4 0.7 18.4 19 0 0 19 19 18 11 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:47 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF234-203 - 1.8e-23 81.9 0.2 2.1e-23 81.7 0.2 1.1 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF234-204 - 6.9e-136 437.2 150.2 9.9e-09 35.2 1.1 19.5 20 0 0 20 20 19 19 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF234-204 - 8.9e-95 306.2 152.3 1.3e-06 28.5 1.4 19.3 19 0 0 19 19 19 18 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF234-204 - 2.1e-49 161.9 152.2 0.00059 20.5 1.2 18.8 19 0 0 19 19 19 17 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF234-204 - 6e-29 99.7 84.2 0.018 15.3 0.3 17.7 18 0 0 18 18 17 12 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 ZNF234-204 - 1.3e-21 75.9 0.2 2.7e-21 74.9 0.2 1.6 1 0 0 1 1 1 1 KRAB box Zn-ribbon_8 PF09723.10 ZNF234-204 - 4.4e-14 52.3 105.4 0.043 13.9 2.6 13.5 5 3 12 17 17 17 12 Zinc ribbon domain zf_UBZ PF18439.1 ZNF234-204 - 1.2e-13 50.4 96.6 0.34 10.5 0.5 18.0 18 0 0 18 18 18 9 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 ZNF234-204 - 1.6e-10 41.0 131.6 0.15 12.5 0.5 18.1 19 0 0 19 19 19 11 Zinc-finger of C2H2 type XPA_N PF01286.18 ZNF234-204 - 2.1e-10 40.4 88.3 1.7 8.8 0.3 18.2 18 0 0 18 18 18 7 XPA protein N-terminal zf-C2H2_6 PF13912.6 ZNF234-204 - 3.4e-07 30.1 138.1 0.058 13.4 0.7 18.4 19 0 0 19 19 18 11 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF234-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF251-201 - 4.3e-90 292.5 90.9 1.5e-08 34.7 0.2 15.3 15 0 0 15 15 15 13 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF251-201 - 2.9e-67 219.5 93.2 2.5e-06 27.6 0.6 13.4 13 0 0 13 13 13 12 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF251-201 - 4.5e-33 111.1 89.1 0.00028 21.5 1.8 12.8 13 0 0 13 13 12 11 C2H2-type zinc finger KRAB PF01352.27 ZNF251-201 - 8.2e-22 76.6 0.0 1.6e-21 75.7 0.0 1.5 1 0 0 1 1 1 1 KRAB box zf-C2H2_jaz PF12171.8 ZNF251-201 - 6.8e-14 51.7 33.4 0.085 13.2 2.5 10.8 12 0 0 12 12 11 4 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 ZNF251-201 - 2.8e-12 46.5 53.3 0.0044 17.1 3.0 8.4 6 3 2 8 8 8 7 Zinc ribbon domain zf-C2H2_6 PF13912.6 ZNF251-201 - 1.1e-09 38.0 75.2 0.0016 18.4 0.9 12.3 12 1 0 12 12 12 6 C2H2-type zinc finger XPA_N PF01286.18 ZNF251-201 - 2.6e-09 36.9 41.9 2.8 8.0 0.2 12.1 12 0 0 12 12 12 3 XPA protein N-terminal zf_UBZ PF18439.1 ZNF251-201 - 3e-07 29.9 44.6 2.2 7.9 0.2 12.2 12 0 0 12 12 12 1 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 ZNF251-201 - 5.1e-07 30.4 39.7 0.25 12.1 1.1 7.3 2 1 5 8 8 8 5 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF251-202 - 9.9e-20 69.9 0.0 1.1e-19 69.7 0.0 1.0 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF251-203 - 5.7e-23 80.3 0.0 8.8e-23 79.7 0.0 1.3 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF251-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF275-201 - 1.9e-58 192.4 69.0 6.9e-08 32.6 0.4 11.9 13 0 0 13 13 11 10 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF275-201 - 7.4e-57 186.8 63.9 3.6e-06 27.1 0.9 11.3 11 0 0 11 11 11 11 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF275-201 - 5.5e-42 138.8 65.8 0.00093 19.8 0.4 11.2 11 0 0 11 11 11 11 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF275-201 - 2.9e-21 75.2 13.1 0.061 13.6 0.0 10.5 11 0 0 11 11 11 5 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF275-201 - 6.3e-13 48.4 64.7 0.059 13.4 2.2 11.3 11 0 0 11 11 11 7 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZNF275-201 - 3.7e-12 46.2 51.1 0.00024 21.1 0.9 8.2 4 3 5 9 9 9 7 Zinc ribbon domain zf_UBZ PF18439.1 ZNF275-201 - 1.8e-11 43.4 37.4 1 9.0 0.0 11.2 11 0 0 11 11 11 5 Ubiquitin-Binding Zinc Finger zf-C2H2_8 PF15909.5 ZNF275-201 - 1.6e-08 34.8 30.5 0.025 14.9 0.6 6.4 1 1 5 6 6 6 5 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 ZNF275-201 - 7.7e-07 29.8 27.2 0.66 10.8 0.3 6.0 2 1 4 6 6 6 3 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF275-202 - 8.5e-38 127.1 44.3 3.3e-06 27.3 0.2 8.6 9 0 0 9 9 8 7 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF275-202 - 1.7e-32 110.0 37.1 3.9e-05 23.9 2.4 7.6 7 0 0 7 7 7 7 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF275-202 - 2.3e-25 87.1 38.1 0.00078 20.1 0.4 7.4 7 0 0 7 7 7 7 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF275-202 - 2.3e-15 56.4 8.6 0.052 13.9 0.0 6.9 7 0 0 7 7 7 4 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 ZNF275-202 - 1e-08 35.1 29.3 0.0002 21.4 0.9 5.3 3 2 2 5 5 5 4 Zinc ribbon domain zf_UBZ PF18439.1 ZNF275-202 - 6.7e-08 32.0 20.0 1.1 8.9 0.1 7.3 7 0 0 7 7 7 3 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 ZNF275-202 - 7.3e-07 29.0 38.0 0.11 12.5 1.1 7.4 7 0 0 7 7 7 4 C2H2-type zinc finger zf-C2H2_8 PF15909.5 ZNF275-202 - 7.9e-07 29.3 16.1 0.02 15.2 0.5 4.7 2 1 1 4 4 4 3 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF275-204 - 1.9e-58 192.4 69.0 6.9e-08 32.6 0.4 11.9 13 0 0 13 13 11 10 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF275-204 - 7.4e-57 186.8 63.9 3.6e-06 27.1 0.9 11.3 11 0 0 11 11 11 11 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF275-204 - 5.5e-42 138.8 65.8 0.00093 19.8 0.4 11.2 11 0 0 11 11 11 11 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF275-204 - 2.9e-21 75.2 13.1 0.061 13.6 0.0 10.5 11 0 0 11 11 11 5 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF275-204 - 6.3e-13 48.4 64.7 0.059 13.4 2.2 11.3 11 0 0 11 11 11 7 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZNF275-204 - 3.7e-12 46.2 51.1 0.00024 21.1 0.9 8.2 4 3 5 9 9 9 7 Zinc ribbon domain zf_UBZ PF18439.1 ZNF275-204 - 1.8e-11 43.4 37.4 1 9.0 0.0 11.2 11 0 0 11 11 11 5 Ubiquitin-Binding Zinc Finger zf-C2H2_8 PF15909.5 ZNF275-204 - 1.6e-08 34.8 30.5 0.025 14.9 0.6 6.4 1 1 5 6 6 6 5 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 ZNF275-204 - 7.7e-07 29.8 27.2 0.66 10.8 0.3 6.0 2 1 4 6 6 6 3 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF275-205 - 8.1e-58 190.4 68.5 8.1e-08 32.4 0.4 11.9 13 0 0 13 13 11 10 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF275-205 - 3.6e-56 184.6 63.9 4.2e-06 26.9 0.9 11.5 11 0 0 11 11 11 11 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF275-205 - 3.1e-41 136.5 65.8 0.0011 19.6 0.4 11.3 11 0 0 11 11 11 11 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF275-205 - 2.9e-20 72.0 14.1 0.072 13.4 0.0 10.4 11 0 0 11 11 11 5 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF275-205 - 3.3e-12 46.1 64.7 0.07 13.2 2.2 11.3 11 0 0 11 11 11 7 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZNF275-205 - 6.2e-12 45.4 50.1 0.00029 20.9 0.9 8.1 4 3 5 9 9 9 7 Zinc ribbon domain zf_UBZ PF18439.1 ZNF275-205 - 9.1e-11 41.2 37.4 1.2 8.8 0.0 11.1 11 0 0 11 11 11 5 Ubiquitin-Binding Zinc Finger zf-C2H2_8 PF15909.5 ZNF275-205 - 2.9e-08 33.9 29.9 0.027 14.7 0.5 6.4 1 1 4 6 6 6 5 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF275-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_2 PF12756.7 ZNF277-201 - 2e-47 159.7 24.3 2.4e-22 79.2 6.5 3.2 3 0 0 3 3 3 3 C2H2 type zinc-finger (2 copies) zf-C2H2_4 PF13894.6 ZNF277-201 - 5.6e-12 45.4 21.1 0.0012 19.5 0.6 5.7 5 0 0 5 5 5 5 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_2 PF12756.7 ZNF277-202 - 2e-42 143.7 21.5 1.7e-22 79.6 6.5 2.8 3 0 0 3 3 3 2 C2H2 type zinc-finger (2 copies) zf-C2H2_4 PF13894.6 ZNF277-202 - 8.7e-11 41.7 16.5 0.00092 19.9 0.6 4.8 4 0 0 4 4 4 4 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_2 PF12756.7 ZNF277-206 - 1.8e-28 98.8 10.3 1.1e-22 80.2 6.2 2.2 2 0 0 2 2 2 2 C2H2 type zinc-finger (2 copies) zf-C2H2_4 PF13894.6 ZNF277-206 - 3.2e-09 36.8 7.8 0.00066 20.3 0.6 3.7 3 0 0 3 3 3 3 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF277-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4195 PF13836.6 ZNF280B-201 - 1e-67 227.9 16.0 2.3e-67 226.7 16.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4195 PF13836.6 ZNF280B-202 - 1e-67 227.9 16.0 2.3e-67 226.7 16.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4195 PF13836.6 ZNF280B-203 - 1e-67 227.9 16.0 2.3e-67 226.7 16.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF280B-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF296-201 - 1.2e-18 66.5 53.1 0.00013 22.3 3.6 6.9 7 0 0 7 7 7 6 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 ZNF296-201 - 2.9e-17 62.2 47.9 6.9e-08 32.6 0.6 7.9 9 0 0 9 9 8 3 Zinc-finger double domain zf-C2H2_4 PF13894.6 ZNF296-201 - 2e-13 49.9 48.9 0.0019 18.8 1.0 6.9 7 0 0 7 7 7 6 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF296-202 - 7.7e-19 67.0 53.1 0.00012 22.3 3.6 6.9 7 0 0 7 7 7 6 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 ZNF296-202 - 1.8e-17 62.8 47.9 6.5e-08 32.7 0.6 7.9 9 0 0 9 9 8 3 Zinc-finger double domain zf-C2H2_4 PF13894.6 ZNF296-202 - 1.3e-13 50.5 48.9 0.0018 18.9 1.0 6.9 7 0 0 7 7 7 6 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF296-202.fa # 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Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4772 PF15997.5 ZNF395-201 - 1.8e-30 105.9 0.0 3.9e-30 104.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4772) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-201.fa # 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Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4772 PF15997.5 ZNF395-210 - 1.8e-30 105.9 0.0 3.9e-30 104.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4772) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4772 PF15997.5 ZNF395-211 - 1.8e-30 105.9 0.0 3.9e-30 104.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4772) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF395-211.fa # 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Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF396-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_8 PF15909.5 ZNF414-201 - 3.6e-58 193.9 12.0 5.6e-58 193.3 12.0 1.3 1 0 0 1 1 1 1 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_8 PF15909.5 ZNF414-202 - 4.7e-58 193.5 12.0 8.6e-58 192.7 12.0 1.4 1 0 0 1 1 1 1 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF414-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF48-201 - 6.5e-68 222.4 76.3 2.5e-09 37.1 0.1 15.6 16 1 0 16 16 15 9 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF48-201 - 4.8e-67 218.9 72.2 1e-06 28.9 0.5 12.2 12 0 0 12 12 12 12 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF48-201 - 6.4e-42 138.6 71.2 0.0047 17.7 1.3 12.2 12 0 0 12 12 12 12 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF48-201 - 1.5e-31 108.0 20.2 0.1 12.9 0.0 12.1 12 0 0 12 12 12 10 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF48-201 - 4.2e-15 55.3 73.7 0.0034 17.4 0.1 13.5 12 3 0 12 12 12 6 C2H2-type zinc finger DZR PF12773.7 ZNF48-201 - 4.6e-10 39.4 31.9 0.037 14.0 0.3 6.7 5 1 0 5 5 5 4 Double zinc ribbon XPA_N PF01286.18 ZNF48-201 - 2.6e-09 37.0 44.2 0.74 9.9 0.2 11.9 12 0 0 12 12 12 3 XPA protein N-terminal zf_UBZ PF18439.1 ZNF48-201 - 2.6e-09 36.5 36.2 0.77 9.4 0.2 11.5 12 0 0 12 12 12 3 Ubiquitin-Binding Zinc Finger zf-Di19 PF05605.12 ZNF48-201 - 2.4e-08 34.2 34.3 0.039 14.3 1.2 6.6 6 0 0 6 6 6 6 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_15 PF17032.5 ZNF48-201 - 9.5e-08 32.7 20.2 0.73 10.6 0.1 6.2 5 1 1 6 6 6 3 zinc-ribbon family zf-C2H2_8 PF15909.5 ZNF48-201 - 1.1e-07 32.1 12.6 0.78 10.1 0.0 6.0 5 1 1 6 6 6 2 C2H2-type zinc ribbon zinc_ribbon_9 PF14369.6 ZNF48-201 - 6.3e-07 29.5 39.2 0.65 10.3 0.0 10.4 11 0 0 11 11 11 3 zinc-ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF48-205 - 6.5e-68 222.4 76.3 2.5e-09 37.1 0.1 15.6 16 1 0 16 16 15 9 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF48-205 - 4.8e-67 218.9 72.2 1e-06 28.9 0.5 12.2 12 0 0 12 12 12 12 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF48-205 - 6.4e-42 138.6 71.2 0.0047 17.7 1.3 12.2 12 0 0 12 12 12 12 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF48-205 - 1.5e-31 108.0 20.2 0.1 12.9 0.0 12.1 12 0 0 12 12 12 10 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF48-205 - 4.2e-15 55.3 73.7 0.0034 17.4 0.1 13.5 12 3 0 12 12 12 6 C2H2-type zinc finger DZR PF12773.7 ZNF48-205 - 4.6e-10 39.4 31.9 0.037 14.0 0.3 6.7 5 1 0 5 5 5 4 Double zinc ribbon XPA_N PF01286.18 ZNF48-205 - 2.6e-09 37.0 44.2 0.74 9.9 0.2 11.9 12 0 0 12 12 12 3 XPA protein N-terminal zf_UBZ PF18439.1 ZNF48-205 - 2.6e-09 36.5 36.2 0.77 9.4 0.2 11.5 12 0 0 12 12 12 3 Ubiquitin-Binding Zinc Finger zf-Di19 PF05605.12 ZNF48-205 - 2.4e-08 34.2 34.3 0.039 14.3 1.2 6.6 6 0 0 6 6 6 6 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_15 PF17032.5 ZNF48-205 - 9.5e-08 32.7 20.2 0.73 10.6 0.1 6.2 5 1 1 6 6 6 3 zinc-ribbon family zf-C2H2_8 PF15909.5 ZNF48-205 - 1.1e-07 32.1 12.6 0.78 10.1 0.0 6.0 5 1 1 6 6 6 2 C2H2-type zinc ribbon zinc_ribbon_9 PF14369.6 ZNF48-205 - 6.3e-07 29.5 39.2 0.65 10.3 0.0 10.4 11 0 0 11 11 11 3 zinc-ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF48-206 - 1.9e-69 227.2 73.3 1.9e-09 37.5 0.1 14.8 15 1 0 15 15 14 9 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF48-206 - 1.9e-61 201.2 71.5 7.8e-07 29.2 0.5 12.2 12 0 0 12 12 12 11 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF48-206 - 1.5e-38 128.1 69.7 0.0036 18.0 1.3 11.9 12 0 0 12 12 12 11 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF48-206 - 3.2e-30 103.7 19.9 0.08 13.3 0.0 11.4 12 0 0 12 12 11 10 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF48-206 - 1.9e-14 53.2 68.1 0.0026 17.7 0.1 12.9 11 3 0 11 11 11 6 C2H2-type zinc finger XPA_N PF01286.18 ZNF48-206 - 4.6e-10 39.4 40.0 0.58 10.3 0.2 11.0 11 0 0 11 11 11 3 XPA protein N-terminal zf_UBZ PF18439.1 ZNF48-206 - 5.2e-10 38.7 32.6 0.6 9.8 0.2 10.6 11 0 0 11 11 11 3 Ubiquitin-Binding Zinc Finger zf-Di19 PF05605.12 ZNF48-206 - 1.7e-08 34.6 31.7 0.029 14.7 1.2 6.6 6 0 0 6 6 6 5 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_9 PF14369.6 ZNF48-206 - 3.9e-08 33.4 35.2 0.5 10.7 0.0 9.6 10 0 0 10 10 10 4 zinc-ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF48-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF518B-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_11 PF16622.5 ZNF532-201 - 2.2e-18 65.7 65.6 2.2e-16 59.3 3.8 9.8 11 0 0 11 11 11 5 zinc-finger C2H2-type zf-C2H2 PF00096.26 ZNF532-201 - 5.3e-18 64.4 120.1 0.0022 18.4 0.5 15.5 15 0 0 15 15 15 10 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF532-201 - 4.9e-15 54.9 112.6 0.0022 18.7 0.3 15.3 15 0 0 15 15 15 10 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF532-201 - 1e-06 28.9 0.7 0.00026 21.2 0.1 9.5 11 0 0 11 11 11 3 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:53 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_11 PF16622.5 ZNF532-211 - 3e-21 74.8 36.3 3e-17 62.1 3.8 5.0 5 0 0 5 5 5 3 zinc-finger C2H2-type zf-C2H2 PF00096.26 ZNF532-211 - 4.1e-12 45.9 43.6 0.00031 21.0 0.5 5.2 5 0 0 5 5 5 4 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF532-211 - 1e-10 41.5 40.6 0.0003 21.4 0.3 5.3 5 0 0 5 5 5 4 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZNF532-211 - 6.8e-07 29.1 0.2 6.8e-07 29.1 0.2 4.7 5 0 0 5 5 5 2 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_11 PF16622.5 ZNF532-214 - 2.2e-18 65.7 65.6 2.2e-16 59.3 3.8 9.8 11 0 0 11 11 11 5 zinc-finger C2H2-type zf-C2H2 PF00096.26 ZNF532-214 - 5.3e-18 64.4 120.1 0.0022 18.4 0.5 15.5 15 0 0 15 15 15 10 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF532-214 - 4.9e-15 54.9 112.6 0.0022 18.7 0.3 15.3 15 0 0 15 15 15 10 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF532-214 - 1e-06 28.9 0.7 0.00026 21.2 0.1 9.5 11 0 0 11 11 11 3 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_11 PF16622.5 ZNF532-220 - 2.1e-17 62.5 3.8 2.1e-17 62.5 3.8 4.0 4 0 0 4 4 4 1 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 ZNF532-220 - 4.9e-07 29.6 0.2 4.9e-07 29.6 0.2 3.3 3 0 0 3 3 3 1 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:54 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_11 PF16622.5 ZNF532-222 - 2.2e-18 65.7 65.6 2.2e-16 59.3 3.8 9.8 11 0 0 11 11 11 5 zinc-finger C2H2-type zf-C2H2 PF00096.26 ZNF532-222 - 5.3e-18 64.4 120.1 0.0022 18.4 0.5 15.5 15 0 0 15 15 15 10 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF532-222 - 4.9e-15 54.9 112.6 0.0022 18.7 0.3 15.3 15 0 0 15 15 15 10 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF532-222 - 1e-06 28.9 0.7 0.00026 21.2 0.1 9.5 11 0 0 11 11 11 3 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:37:55 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_11 PF16622.5 ZNF532-223 - 2.2e-18 65.7 65.6 2.2e-16 59.3 3.8 9.8 11 0 0 11 11 11 5 zinc-finger C2H2-type zf-C2H2 PF00096.26 ZNF532-223 - 5.3e-18 64.4 120.1 0.0022 18.4 0.5 15.5 15 0 0 15 15 15 10 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF532-223 - 4.9e-15 54.9 112.6 0.0022 18.7 0.3 15.3 15 0 0 15 15 15 10 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF532-223 - 1e-06 28.9 0.7 0.00026 21.2 0.1 9.5 11 0 0 11 11 11 3 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_11 PF16622.5 ZNF532-224 - 2.2e-18 65.7 65.6 2.2e-16 59.3 3.8 9.8 11 0 0 11 11 11 5 zinc-finger C2H2-type zf-C2H2 PF00096.26 ZNF532-224 - 5.3e-18 64.4 120.1 0.0022 18.4 0.5 15.5 15 0 0 15 15 15 10 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF532-224 - 4.9e-15 54.9 112.6 0.0022 18.7 0.3 15.3 15 0 0 15 15 15 10 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF532-224 - 1e-06 28.9 0.7 0.00026 21.2 0.1 9.5 11 0 0 11 11 11 3 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-224.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-224.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-224.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-224.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-224.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2_11 PF16622.5 ZNF532-225 - 1.7e-20 72.4 35.9 5e-17 61.3 3.8 5.1 5 0 0 5 5 5 3 zinc-finger C2H2-type zf-C2H2 PF00096.26 ZNF532-225 - 1.2e-11 44.4 51.0 0.00051 20.4 0.5 6.3 6 0 0 6 6 6 5 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF532-225 - 2.4e-08 34.1 48.6 0.00049 20.7 0.3 6.3 6 0 0 6 6 6 4 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-225.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-225.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-225.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-225.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-225.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-226.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-226.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-226.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-226.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF532-226.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF546-201 - 8.3e-157 503.4 181.9 1.4e-08 34.8 0.9 22.9 23 0 0 23 23 23 22 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF546-201 - 4e-106 341.9 196.7 8.2e-06 26.0 0.5 22.4 22 0 0 22 22 22 22 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF546-201 - 1.7e-56 184.0 180.5 0.0019 18.9 2.7 22.3 22 0 0 22 22 22 22 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZNF546-201 - 1.5e-35 120.5 177.8 0.016 15.2 2.8 23.2 22 1 0 22 22 22 19 C2H2-type zinc finger KRAB PF01352.27 ZNF546-201 - 1.3e-22 79.2 0.3 2.4e-22 78.3 0.3 1.5 1 0 0 1 1 1 1 KRAB box Zn-ribbon_8 PF09723.10 ZNF546-201 - 2.3e-22 78.8 131.7 0.0055 16.8 2.1 15.3 5 3 15 20 20 20 19 Zinc ribbon domain zf-C2H2_jaz PF12171.8 ZNF546-201 - 1.4e-19 69.8 114.4 0.016 15.5 0.5 19.9 21 0 0 21 21 20 12 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 ZNF546-201 - 1.6e-19 69.6 97.1 1.6 8.8 0.1 22.2 22 0 0 22 22 22 9 XPA protein N-terminal zinc_ribbon_15 PF17032.5 ZNF546-201 - 2.6e-11 44.1 92.9 0.036 14.8 1.2 12.1 6 2 5 13 13 12 11 zinc-ribbon family zf_UBZ PF18439.1 ZNF546-201 - 4.5e-11 42.2 121.7 0.18 11.4 0.4 22.0 22 0 0 22 22 22 10 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 ZNF546-201 - 3.9e-07 29.9 99.5 3.1 7.8 3.4 21.3 21 1 0 21 21 21 4 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:21 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF546-207 - 3.7e-157 504.5 181.9 1.3e-08 34.8 0.9 22.9 23 0 0 23 23 23 22 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF546-207 - 1.8e-106 343.0 196.7 7.9e-06 26.1 0.5 22.4 22 0 0 22 22 22 22 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF546-207 - 7.6e-57 185.0 180.5 0.0018 19.0 2.7 22.3 22 0 0 22 22 22 22 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZNF546-207 - 7.8e-36 121.4 177.9 0.015 15.3 2.8 23.2 22 1 0 22 22 22 19 C2H2-type zinc finger KRAB PF01352.27 ZNF546-207 - 1.2e-22 79.3 0.3 2.3e-22 78.3 0.3 1.5 1 0 0 1 1 1 1 KRAB box Zn-ribbon_8 PF09723.10 ZNF546-207 - 1.3e-22 79.6 131.7 0.0053 16.8 2.1 15.3 5 3 14 20 20 20 18 Zinc ribbon domain zf-C2H2_jaz PF12171.8 ZNF546-207 - 5e-20 71.3 113.9 0.015 15.5 0.5 19.9 21 0 0 21 21 20 12 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 ZNF546-207 - 7.8e-20 70.6 97.1 1.6 8.9 0.1 22.2 22 0 0 22 22 22 10 XPA protein N-terminal zinc_ribbon_15 PF17032.5 ZNF546-207 - 9.4e-12 45.5 91.9 0.04 14.7 1.6 12.1 6 2 8 14 14 13 12 zinc-ribbon family zf_UBZ PF18439.1 ZNF546-207 - 2.1e-11 43.2 121.7 0.17 11.5 0.4 22.0 22 0 0 22 22 22 10 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 ZNF546-207 - 9.7e-09 35.0 95.4 0.92 9.5 0.0 21.3 22 0 0 22 22 22 4 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:21 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF546-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF551-201 - 5.9e-113 364.7 93.4 7.4e-09 35.6 0.1 16.5 16 0 0 16 16 16 16 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF551-201 - 1.2e-81 264.8 131.1 1.4e-07 31.6 1.3 17.6 18 0 0 18 18 18 15 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF551-201 - 1.1e-47 156.5 122.8 0.00046 20.8 1.0 16.8 17 0 0 17 17 16 14 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZNF551-201 - 1.7e-29 101.2 107.8 0.00071 19.5 0.8 15.0 14 0 0 14 14 14 12 C2H2-type zinc finger KRAB PF01352.27 ZNF551-201 - 1.4e-23 82.3 0.5 2.5e-23 81.5 0.5 1.4 1 0 0 1 1 1 1 KRAB box zf_UBZ PF18439.1 ZNF551-201 - 1.3e-08 34.2 81.3 0.2 11.3 0.2 15.0 15 0 0 15 15 15 7 Ubiquitin-Binding Zinc Finger # 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Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF608-210.fa # 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Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF609-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF646-201 - 5.2e-85 275.4 262.0 2e-05 24.8 0.7 32.5 33 0 0 33 33 33 29 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF646-201 - 1e-68 222.0 242.6 0.00054 20.6 0.3 32.4 32 0 0 32 32 32 30 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF646-201 - 6.4e-45 150.6 97.9 0.0013 19.0 0.4 28.0 29 0 0 29 29 29 13 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF646-201 - 3.1e-14 52.6 199.4 0.021 14.8 0.0 28.2 29 0 0 29 29 29 16 C2H2-type zinc finger zf-H2C2_2 PF13465.6 ZNF646-201 - 2.5e-11 43.4 230.6 0.00014 22.1 4.2 34.3 37 0 0 37 37 37 15 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF646-202 - 4.9e-85 275.5 262.0 2e-05 24.8 0.7 32.5 33 0 0 33 33 33 29 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF646-202 - 9.5e-69 222.1 242.6 0.00054 20.6 0.3 32.4 32 0 0 32 32 32 30 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF646-202 - 6.1e-45 150.7 97.9 0.0013 19.0 0.4 28.1 29 0 0 29 29 29 13 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF646-202 - 2.9e-14 52.6 199.4 0.021 14.8 0.0 28.2 29 0 0 29 29 29 16 C2H2-type zinc finger zf-H2C2_2 PF13465.6 ZNF646-202 - 2.4e-11 43.5 230.6 0.00014 22.2 4.2 34.3 37 0 0 37 37 37 15 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF646-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF649-201 - 3e-67 220.3 67.4 2.7e-08 33.9 0.2 11.3 11 0 0 11 11 11 10 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF649-201 - 4.1e-46 152.9 77.6 1.2e-06 28.6 1.5 11.3 11 0 0 11 11 11 10 Zinc finger, C2H2 type KRAB PF01352.27 ZNF649-201 - 5.5e-25 86.7 0.9 9.5e-25 86.0 0.9 1.4 1 0 0 1 1 1 1 KRAB box zf-C2H2_4 PF13894.6 ZNF649-201 - 1.9e-24 84.2 77.8 0.0063 17.3 0.7 11.3 11 0 0 11 11 11 10 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF649-207 - 8.4e-63 206.2 58.6 2.5e-08 34.0 0.2 10.3 10 0 0 10 10 10 9 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF649-207 - 8.8e-44 145.6 70.3 1.1e-06 28.7 1.5 10.3 10 0 0 10 10 10 9 Zinc finger, C2H2 type KRAB PF01352.27 ZNF649-207 - 5.2e-25 86.8 0.9 8.8e-25 86.1 0.9 1.4 1 0 0 1 1 1 1 KRAB box zf-C2H2_4 PF13894.6 ZNF649-207 - 4.2e-23 80.0 69.1 0.0058 17.4 0.7 10.3 10 0 0 10 10 10 9 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF649-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF655-201 - 1.9e-31 107.0 71.4 1.9e-08 34.4 1.9 10.6 10 0 0 10 10 10 8 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF655-201 - 3.1e-25 87.1 75.3 1.3e-05 25.4 2.6 9.4 10 0 0 10 10 10 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF655-201 - 5.5e-12 45.5 70.7 0.0018 18.9 2.4 8.1 9 0 0 9 9 8 5 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF655-202 - 4.5e-25 87.0 0.3 6.8e-25 86.4 0.3 1.3 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-202.fa # 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Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF655-204 - 1.9e-31 107.0 71.4 1.9e-08 34.4 1.9 10.6 10 0 0 10 10 10 8 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF655-204 - 3.1e-25 87.1 75.3 1.3e-05 25.4 2.6 9.4 10 0 0 10 10 10 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF655-204 - 5.5e-12 45.5 70.7 0.0018 18.9 2.4 8.1 9 0 0 9 9 8 5 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-204.fa # 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Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-208.fa # 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Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF655-211 - 2.4e-25 87.9 0.3 3.7e-25 87.3 0.3 1.3 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF655-212 - 4.4e-31 105.9 71.4 2e-08 34.3 1.9 10.5 10 0 0 10 10 10 8 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF655-212 - 6.4e-25 86.2 75.3 1.4e-05 25.3 2.6 9.4 10 0 0 10 10 10 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF655-212 - 1e-11 44.6 70.7 0.002 18.8 2.4 8.0 9 0 0 9 9 8 5 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF655-213 - 1.7e-33 113.5 71.4 1.1e-08 35.1 1.9 10.5 10 0 0 10 10 10 8 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF655-213 - 7.5e-27 92.3 75.8 7.8e-06 26.1 2.6 9.4 10 0 0 10 10 10 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF655-213 - 1.5e-13 50.3 70.7 0.0011 19.6 2.4 8.2 9 0 0 9 9 9 6 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF655-219 - 2.6e-25 87.8 0.3 3.7e-25 87.3 0.3 1.2 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-219.fa # 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Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF655-222 - 4.4e-31 105.9 71.4 2e-08 34.3 1.9 10.5 10 0 0 10 10 10 8 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF655-222 - 6.4e-25 86.2 75.3 1.4e-05 25.3 2.6 9.4 10 0 0 10 10 10 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF655-222 - 1e-11 44.6 70.7 0.002 18.8 2.4 8.0 9 0 0 9 9 8 5 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF655-224 - 1.7e-33 113.5 71.4 1.1e-08 35.1 1.9 10.5 10 0 0 10 10 10 8 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF655-224 - 7.5e-27 92.3 75.8 7.8e-06 26.1 2.6 9.4 10 0 0 10 10 10 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF655-224 - 1.5e-13 50.3 70.7 0.0011 19.6 2.4 8.2 9 0 0 9 9 9 6 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-224.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-224.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-224.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-224.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-224.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-225.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-225.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-225.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-225.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF655-225.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF668-201 - 1.4e-87 284.5 113.2 6.3e-08 32.7 0.4 18.2 18 0 0 18 18 18 14 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF668-201 - 1.6e-73 239.2 108.6 3.4e-05 24.1 0.4 16.2 16 0 0 16 16 16 16 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF668-201 - 2e-56 183.7 105.4 5.6e-05 23.6 0.7 16.2 16 0 0 16 16 16 16 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF668-201 - 5.6e-29 99.8 42.4 0.0012 19.1 0.0 15.2 16 0 0 16 16 16 7 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF668-201 - 4.2e-16 58.5 91.3 0.0027 17.7 0.7 15.3 15 0 0 15 15 15 9 C2H2-type zinc finger zf_UBZ PF18439.1 ZNF668-201 - 4e-14 51.9 54.7 0.14 11.8 0.8 15.0 14 1 1 15 15 15 5 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 ZNF668-201 - 5.5e-09 36.1 62.5 0.1 13.1 0.2 14.3 15 0 0 15 15 15 4 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 ZNF668-201 - 2.7e-08 33.8 74.5 0.013 15.6 2.1 12.6 7 3 9 16 16 16 7 Zinc ribbon domain zf-C2H2_11 PF16622.5 ZNF668-201 - 1.3e-07 31.2 72.4 0.014 15.1 0.1 13.7 15 0 0 15 15 15 6 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF668-202 - 1.4e-87 284.5 113.2 6.3e-08 32.7 0.4 18.2 18 0 0 18 18 18 14 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF668-202 - 1.6e-73 239.2 108.6 3.4e-05 24.1 0.4 16.2 16 0 0 16 16 16 16 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF668-202 - 2e-56 183.7 105.4 5.6e-05 23.6 0.7 16.2 16 0 0 16 16 16 16 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF668-202 - 5.6e-29 99.8 42.4 0.0012 19.1 0.0 15.2 16 0 0 16 16 16 7 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF668-202 - 4.2e-16 58.5 91.3 0.0027 17.7 0.7 15.3 15 0 0 15 15 15 9 C2H2-type zinc finger zf_UBZ PF18439.1 ZNF668-202 - 4e-14 51.9 54.7 0.14 11.8 0.8 15.0 14 1 1 15 15 15 5 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 ZNF668-202 - 5.5e-09 36.1 62.5 0.1 13.1 0.2 14.3 15 0 0 15 15 15 4 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 ZNF668-202 - 2.7e-08 33.8 74.5 0.013 15.6 2.1 12.6 7 3 9 16 16 16 7 Zinc ribbon domain zf-C2H2_11 PF16622.5 ZNF668-202 - 1.3e-07 31.2 72.4 0.014 15.1 0.1 13.7 15 0 0 15 15 15 6 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF668-205 - 4.5e-87 282.9 113.8 6.6e-08 32.6 0.4 18.2 18 0 0 18 18 18 14 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF668-205 - 3.2e-73 238.3 108.6 3.5e-05 24.0 0.4 16.2 16 0 0 16 16 16 16 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF668-205 - 4e-56 182.8 105.4 5.8e-05 23.6 0.7 16.2 16 0 0 16 16 16 16 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF668-205 - 1e-28 98.9 42.4 0.0013 19.0 0.0 15.2 16 0 0 16 16 15 7 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF668-205 - 7.9e-16 57.6 91.3 0.0028 17.6 0.7 15.3 15 0 0 15 15 15 9 C2H2-type zinc finger zf_UBZ PF18439.1 ZNF668-205 - 7.3e-14 51.1 54.7 0.15 11.7 0.8 14.9 14 1 1 15 15 15 5 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 ZNF668-205 - 9.9e-09 35.3 62.5 0.1 13.0 0.2 14.3 15 0 0 15 15 15 4 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 ZNF668-205 - 3e-08 33.6 73.9 0.012 15.8 1.9 12.6 7 3 8 15 15 15 7 Zinc ribbon domain zf-C2H2_11 PF16622.5 ZNF668-205 - 2.2e-07 30.5 72.4 0.015 15.0 0.1 13.7 15 0 0 15 15 15 6 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF668-207 - 1.4e-87 284.5 113.2 6.3e-08 32.7 0.4 18.2 18 0 0 18 18 18 14 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF668-207 - 1.6e-73 239.2 108.6 3.4e-05 24.1 0.4 16.2 16 0 0 16 16 16 16 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF668-207 - 2e-56 183.7 105.4 5.6e-05 23.6 0.7 16.2 16 0 0 16 16 16 16 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF668-207 - 5.6e-29 99.8 42.4 0.0012 19.1 0.0 15.2 16 0 0 16 16 16 7 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF668-207 - 4.2e-16 58.5 91.3 0.0027 17.7 0.7 15.3 15 0 0 15 15 15 9 C2H2-type zinc finger zf_UBZ PF18439.1 ZNF668-207 - 4e-14 51.9 54.7 0.14 11.8 0.8 15.0 14 1 1 15 15 15 5 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 ZNF668-207 - 5.5e-09 36.1 62.5 0.1 13.1 0.2 14.3 15 0 0 15 15 15 4 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 ZNF668-207 - 2.7e-08 33.8 74.5 0.013 15.6 2.1 12.6 7 3 9 16 16 16 7 Zinc ribbon domain zf-C2H2_11 PF16622.5 ZNF668-207 - 1.3e-07 31.2 72.4 0.014 15.1 0.1 13.7 15 0 0 15 15 15 6 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:23 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF668-208 - 1.4e-87 284.5 113.2 6.3e-08 32.7 0.4 18.2 18 0 0 18 18 18 14 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF668-208 - 1.6e-73 239.2 108.6 3.4e-05 24.1 0.4 16.2 16 0 0 16 16 16 16 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF668-208 - 2e-56 183.7 105.4 5.6e-05 23.6 0.7 16.2 16 0 0 16 16 16 16 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF668-208 - 5.6e-29 99.8 42.4 0.0012 19.1 0.0 15.2 16 0 0 16 16 16 7 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF668-208 - 4.2e-16 58.5 91.3 0.0027 17.7 0.7 15.3 15 0 0 15 15 15 9 C2H2-type zinc finger zf_UBZ PF18439.1 ZNF668-208 - 4e-14 51.9 54.7 0.14 11.8 0.8 15.0 14 1 1 15 15 15 5 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 ZNF668-208 - 5.5e-09 36.1 62.5 0.1 13.1 0.2 14.3 15 0 0 15 15 15 4 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 ZNF668-208 - 2.7e-08 33.8 74.5 0.013 15.6 2.1 12.6 7 3 9 16 16 16 7 Zinc ribbon domain zf-C2H2_11 PF16622.5 ZNF668-208 - 1.3e-07 31.2 72.4 0.014 15.1 0.1 13.7 15 0 0 15 15 15 6 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF668-209 - 4.5e-87 282.9 113.8 6.6e-08 32.6 0.4 18.2 18 0 0 18 18 18 14 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF668-209 - 3.2e-73 238.3 108.6 3.5e-05 24.0 0.4 16.2 16 0 0 16 16 16 16 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF668-209 - 4e-56 182.8 105.4 5.8e-05 23.6 0.7 16.2 16 0 0 16 16 16 16 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF668-209 - 1e-28 98.9 42.4 0.0013 19.0 0.0 15.2 16 0 0 16 16 15 7 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF668-209 - 7.9e-16 57.6 91.3 0.0028 17.6 0.7 15.3 15 0 0 15 15 15 9 C2H2-type zinc finger zf_UBZ PF18439.1 ZNF668-209 - 7.3e-14 51.1 54.7 0.15 11.7 0.8 14.9 14 1 1 15 15 15 5 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 ZNF668-209 - 9.9e-09 35.3 62.5 0.1 13.0 0.2 14.3 15 0 0 15 15 15 4 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 ZNF668-209 - 3e-08 33.6 73.9 0.012 15.8 1.9 12.6 7 3 8 15 15 15 7 Zinc ribbon domain zf-C2H2_11 PF16622.5 ZNF668-209 - 2.2e-07 30.5 72.4 0.015 15.0 0.1 13.7 15 0 0 15 15 15 6 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF668-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF672-201 - 9e-63 206.1 97.0 1.4e-08 34.7 3.9 14.6 15 0 0 15 15 15 12 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF672-201 - 7.6e-57 186.7 110.2 1.3e-06 28.5 1.1 14.2 14 0 0 14 14 14 14 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF672-201 - 3.1e-41 136.5 106.2 7.4e-05 23.3 0.6 14.2 14 0 0 14 14 14 14 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF672-201 - 2.2e-14 53.3 40.3 0.06 13.7 0.0 12.6 12 1 1 13 13 13 4 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF672-201 - 1.1e-13 50.8 90.5 0.013 15.5 0.1 14.5 15 0 0 15 15 15 9 C2H2-type zinc finger zf-C2H2_11 PF16622.5 ZNF672-201 - 2.2e-07 30.5 96.2 0.01 15.6 2.1 13.1 14 0 0 14 14 14 6 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:20 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF672-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF699-201 - 2.8e-123 397.4 146.3 8.2e-10 38.7 1.6 18.2 18 0 0 18 18 18 16 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF699-201 - 3.9e-76 247.5 141.8 3.7e-07 30.2 1.0 17.2 17 0 0 17 17 17 16 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF699-201 - 4.6e-57 185.7 141.4 0.0003 21.3 1.2 17.4 17 0 0 17 17 17 16 C2H2-type zinc finger KRAB PF01352.27 ZNF699-201 - 9e-26 89.3 1.1 1.7e-25 88.4 1.1 1.5 1 0 0 1 1 1 1 KRAB box zf-C2H2_jaz PF12171.8 ZNF699-201 - 1.7e-22 79.2 91.3 0.00031 20.9 0.6 16.6 16 0 0 16 16 16 9 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF699-201 - 3.6e-22 77.8 138.6 1.6e-05 24.8 2.1 17.2 17 0 0 17 17 16 13 C2H2-type zinc finger zf-C2H2_11 PF16622.5 ZNF699-201 - 1.5e-13 50.2 90.7 0.016 15.0 1.7 16.0 16 0 0 16 16 16 8 zinc-finger C2H2-type XPA_N PF01286.18 ZNF699-201 - 8.2e-08 32.2 103.1 0.25 11.4 0.0 16.2 16 0 0 16 16 16 5 XPA protein N-terminal zf_UBZ PF18439.1 ZNF699-201 - 4.9e-07 29.2 96.1 0.05 13.2 0.3 16.6 17 0 0 17 17 17 6 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 ZNF699-201 - 6e-07 29.5 113.7 0.098 12.8 6.3 12.1 3 3 12 15 15 15 10 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF699-203 - 2.8e-123 397.4 146.3 8.2e-10 38.7 1.6 18.2 18 0 0 18 18 18 16 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF699-203 - 3.9e-76 247.5 141.8 3.7e-07 30.2 1.0 17.2 17 0 0 17 17 17 16 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF699-203 - 4.6e-57 185.7 141.4 0.0003 21.3 1.2 17.4 17 0 0 17 17 17 16 C2H2-type zinc finger KRAB PF01352.27 ZNF699-203 - 9e-26 89.3 1.1 1.7e-25 88.4 1.1 1.5 1 0 0 1 1 1 1 KRAB box zf-C2H2_jaz PF12171.8 ZNF699-203 - 1.7e-22 79.2 91.3 0.00031 20.9 0.6 16.6 16 0 0 16 16 16 9 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 ZNF699-203 - 3.6e-22 77.8 138.6 1.6e-05 24.8 2.1 17.2 17 0 0 17 17 16 13 C2H2-type zinc finger zf-C2H2_11 PF16622.5 ZNF699-203 - 1.5e-13 50.2 90.7 0.016 15.0 1.7 16.0 16 0 0 16 16 16 8 zinc-finger C2H2-type XPA_N PF01286.18 ZNF699-203 - 8.2e-08 32.2 103.1 0.25 11.4 0.0 16.2 16 0 0 16 16 16 5 XPA protein N-terminal zf_UBZ PF18439.1 ZNF699-203 - 4.9e-07 29.2 96.1 0.05 13.2 0.3 16.6 17 0 0 17 17 17 6 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 ZNF699-203 - 6e-07 29.5 113.7 0.098 12.8 6.3 12.1 3 3 12 15 15 15 10 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF699-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF70-201 - 4.5e-79 257.6 93.6 1.4e-09 38.0 0.8 12.3 12 0 0 12 12 12 11 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF70-201 - 1.8e-64 210.7 90.5 1.3e-06 28.5 0.5 11.3 11 0 0 11 11 11 11 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF70-201 - 5.3e-37 123.3 89.2 0.00073 20.2 0.8 11.3 11 0 0 11 11 11 11 C2H2-type zinc finger XPA_N PF01286.18 ZNF70-201 - 2.9e-11 43.2 52.4 0.34 11.0 0.3 11.2 11 0 0 11 11 11 7 XPA protein N-terminal zf-C2H2_6 PF13912.6 ZNF70-201 - 4.3e-11 42.5 94.7 5e-05 23.2 0.9 12.1 13 1 0 13 13 11 8 C2H2-type zinc finger zf-C2H2_11 PF16622.5 ZNF70-201 - 3.3e-09 36.3 73.3 0.0052 16.5 0.3 10.5 10 0 0 10 10 10 5 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 ZNF70-201 - 4.9e-09 36.2 52.8 0.11 12.8 0.0 11.2 11 0 0 11 11 11 5 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 ZNF70-201 - 6.2e-09 35.8 60.3 0.049 13.8 5.8 8.6 4 3 5 10 10 10 7 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF70-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF70-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF70-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF70-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF70-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF717-203 - 3.1e-23 81.1 1.5 4.5e-23 80.6 1.5 1.2 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF717-204 - 1.9e-123 397.9 191.0 1.8e-08 34.4 2.4 23.4 24 0 0 24 24 24 19 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF717-204 - 2.1e-81 264.1 215.7 6.7e-07 29.4 0.6 23.0 23 0 0 23 23 23 21 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF717-204 - 1.1e-38 128.5 202.0 0.0044 17.7 4.7 22.2 23 0 0 23 23 23 18 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZNF717-204 - 1.3e-07 31.6 125.4 0.062 13.4 5.1 13.4 9 4 5 14 14 14 9 Zinc ribbon domain XPA_N PF01286.18 ZNF717-204 - 2.6e-07 30.5 95.3 5.3 7.2 0.1 18.6 19 0 0 19 19 19 12 XPA protein N-terminal zf-C2H2_6 PF13912.6 ZNF717-204 - 9.9e-07 28.6 171.7 0.072 13.1 0.3 21.4 22 0 0 22 22 22 15 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF717-205 - 7e-25 86.4 6.5 2.3e-23 81.5 1.5 2.1 2 0 0 2 2 2 2 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF717-206 - 2.1e-23 81.7 1.5 2.8e-23 81.3 1.5 1.2 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF717-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF720-201 - 1.7e-24 85.2 0.2 3.6e-24 84.1 0.2 1.6 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF720-203 - 3.4e-82 267.5 130.6 1e-08 35.2 2.5 15.3 15 1 0 15 15 14 11 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF720-203 - 4.7e-50 165.3 145.3 6.2e-07 29.5 0.7 14.4 15 0 0 15 15 14 11 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF720-203 - 1.1e-24 85.0 132.8 0.0033 18.1 0.8 14.1 14 1 1 15 15 13 11 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF720-203 - 1.2e-14 54.1 73.3 0.048 14.0 0.4 12.0 11 0 0 11 11 11 9 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 ZNF720-203 - 7.3e-10 38.8 73.5 0.0066 16.5 2.3 9.4 3 2 8 11 11 11 10 Zinc ribbon domain zf-C2H2_6 PF13912.6 ZNF720-203 - 3.5e-09 36.4 107.7 0.038 14.0 1.1 13.6 13 1 0 13 13 13 9 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF720-205 - 5.8e-24 83.5 0.2 1.2e-23 82.5 0.2 1.6 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF720-209 - 3.8e-81 264.2 130.6 1.2e-08 35.0 2.5 15.3 15 1 0 15 15 14 11 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF720-209 - 4.1e-49 162.4 145.3 7.2e-07 29.3 0.7 14.3 15 0 0 15 15 14 11 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF720-209 - 1.2e-23 81.8 133.0 0.0038 17.9 0.8 14.0 14 1 1 15 15 13 11 C2H2-type zinc finger KRAB PF01352.27 ZNF720-209 - 1.9e-23 81.8 0.2 3.5e-23 81.0 0.2 1.5 1 0 0 1 1 1 1 KRAB box zf-C2H2_jaz PF12171.8 ZNF720-209 - 7.2e-14 51.6 73.3 0.056 13.7 0.4 11.9 11 0 0 11 11 11 8 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 ZNF720-209 - 5.2e-09 36.1 74.2 0.0094 16.0 2.6 9.3 3 2 8 11 11 11 10 Zinc ribbon domain zf-C2H2_6 PF13912.6 ZNF720-209 - 2.1e-08 34.0 107.4 0.045 13.8 1.1 13.4 13 1 0 13 13 13 9 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF720-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF737-201 - 4.6e-106 342.9 124.4 7.5e-09 35.6 3.2 15.3 16 0 0 16 16 15 13 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF737-201 - 2e-63 207.4 96.9 2.4e-06 27.7 0.6 13.7 13 0 0 13 13 13 13 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF737-201 - 5e-37 123.4 94.4 0.0036 18.0 1.2 13.9 13 0 0 13 13 13 13 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZNF737-201 - 6.2e-24 83.5 99.3 0.0007 19.5 1.1 14.0 13 0 0 13 13 13 11 C2H2-type zinc finger KRAB PF01352.27 ZNF737-201 - 4.4e-23 80.6 0.1 8.3e-23 79.8 0.1 1.5 1 0 0 1 1 1 1 KRAB box XPA_N PF01286.18 ZNF737-201 - 7.8e-22 77.0 57.1 0.41 10.7 0.1 13.4 13 0 0 13 13 13 10 XPA protein N-terminal zf-C2H2_jaz PF12171.8 ZNF737-201 - 5.6e-19 67.9 60.7 0.032 14.5 0.2 14.0 14 0 0 14 14 13 7 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 ZNF737-201 - 6.8e-15 54.4 61.1 1.1 8.9 0.1 14.1 14 0 0 14 14 14 10 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 ZNF737-201 - 7.4e-12 45.2 85.7 0.014 15.5 4.5 10.9 3 2 11 14 14 13 10 Zinc ribbon domain zf-trcl PF13451.6 ZNF737-201 - 2.6e-09 36.8 54.8 1.1 9.1 0.2 12.9 13 0 0 13 13 13 2 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 ZNF737-201 - 1.3e-08 34.4 47.3 1.4 8.7 0.1 13.3 13 0 0 13 13 13 4 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF737-204 - 6.7e-24 83.3 0.1 9.2e-24 82.8 0.1 1.2 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF737-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF746-201 - 3.7e-19 68.0 31.6 2.2e-06 27.8 3.8 5.1 5 0 0 5 5 4 4 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 ZNF746-201 - 3.8e-12 46.0 28.2 4.7e-06 26.8 0.4 5.2 5 0 0 5 5 5 3 Zinc-finger double domain zf-C2H2_4 PF13894.6 ZNF746-201 - 7.6e-11 41.9 27.2 0.00048 20.7 1.9 4.8 4 0 0 4 4 4 4 C2H2-type zinc finger KRAB PF01352.27 ZNF746-201 - 3.4e-10 39.4 0.3 3.4e-10 39.4 0.3 1.8 2 0 0 2 2 2 1 KRAB box DUF3669 PF12417.8 ZNF746-201 - 1.2e-09 38.3 0.4 3e-09 37.0 0.1 1.9 2 0 0 2 2 2 1 Zinc finger protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:41:22 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF746-202 - 3.7e-19 68.0 31.6 2.2e-06 27.8 3.8 5.1 5 0 0 5 5 4 4 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 ZNF746-202 - 3.9e-12 46.0 28.2 4.8e-06 26.8 0.4 5.2 5 0 0 5 5 5 3 Zinc-finger double domain zf-C2H2_4 PF13894.6 ZNF746-202 - 7.6e-11 41.9 27.2 0.00048 20.7 1.9 4.8 4 0 0 4 4 4 4 C2H2-type zinc finger KRAB PF01352.27 ZNF746-202 - 3.4e-10 39.4 0.3 3.4e-10 39.4 0.3 1.8 2 0 0 2 2 2 1 KRAB box DUF3669 PF12417.8 ZNF746-202 - 1.2e-09 38.3 0.4 3e-09 36.9 0.1 1.9 2 0 0 2 2 2 1 Zinc finger protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:47 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF746-203 - 6.6e-11 41.7 0.3 6.6e-11 41.7 0.3 2.0 2 0 0 2 2 2 1 KRAB box DUF3669 PF12417.8 ZNF746-203 - 2.7e-10 40.3 0.1 3.9e-10 39.8 0.1 1.3 1 0 0 1 1 1 1 Zinc finger protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:47 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF746-205 - 6e-20 70.6 0.5 6e-20 70.6 0.5 1.8 2 0 0 2 2 2 1 KRAB box zf-C2H2 PF00096.26 ZNF746-205 - 4.2e-19 67.9 31.6 2.3e-06 27.8 3.8 5.1 5 0 0 5 5 4 4 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 ZNF746-205 - 4.3e-12 45.9 28.2 4.9e-06 26.7 0.4 5.2 5 0 0 5 5 5 3 Zinc-finger double domain zf-C2H2_4 PF13894.6 ZNF746-205 - 8.4e-11 41.8 27.2 0.00049 20.7 1.9 4.8 4 0 0 4 4 4 4 C2H2-type zinc finger DUF3669 PF12417.8 ZNF746-205 - 1.2e-09 38.3 0.4 3.1e-09 36.9 0.1 1.9 2 0 0 2 2 2 1 Zinc finger protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF746-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:47 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF827-201 - 3.1e-15 55.7 76.8 0.00038 20.7 0.2 9.1 9 0 0 9 9 9 6 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 ZNF827-201 - 4.3e-14 52.0 51.3 0.00057 19.6 3.1 7.4 7 0 0 7 7 7 5 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 ZNF827-201 - 9e-08 32.3 75.8 0.0026 18.4 0.3 9.6 9 0 0 9 9 9 4 C2H2-type zinc finger zf-H2C2_2 PF13465.6 ZNF827-201 - 1.6e-07 31.4 85.7 0.00059 20.2 4.7 12.1 12 1 0 12 12 12 4 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF827-203 - 3.2e-15 55.6 76.8 0.00038 20.7 0.2 9.1 9 0 0 9 9 9 6 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 ZNF827-203 - 4.4e-14 51.9 51.3 0.00058 19.6 3.1 7.4 7 0 0 7 7 7 5 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 ZNF827-203 - 9.3e-08 32.3 75.8 0.0026 18.4 0.3 9.6 9 0 0 9 9 9 4 C2H2-type zinc finger zf-H2C2_2 PF13465.6 ZNF827-203 - 1.7e-07 31.3 85.7 0.00059 20.2 4.7 12.1 12 1 0 12 12 12 4 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_5 PF13909.6 ZNF827-204 - 5.9e-07 29.1 19.7 0.00017 21.3 5.1 2.4 2 0 0 2 2 2 2 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 ZNF827-204 - 8.8e-07 29.0 18.5 0.00028 21.2 6.0 2.5 2 1 0 2 2 2 2 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 ZNF827-204 - 9.1e-07 29.0 16.6 0.0014 18.9 1.7 3.3 3 0 0 3 3 3 2 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_5 PF13909.6 ZNF827-207 - 1.8e-07 30.8 7.4 0.0012 18.5 0.0 2.7 3 0 0 3 3 3 2 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF827-208 - 8e-17 60.7 76.8 0.00025 21.3 0.2 9.1 9 0 0 9 9 9 7 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 ZNF827-208 - 2.4e-15 55.9 51.3 0.00037 20.2 3.1 7.4 7 0 0 7 7 7 5 C2H2-type zinc-finger domain zf-H2C2_2 PF13465.6 ZNF827-208 - 6.7e-10 38.9 85.2 0.00038 20.8 4.7 12.5 12 1 0 12 12 12 5 Zinc-finger double domain zf-C2H2_4 PF13894.6 ZNF827-208 - 1.9e-09 37.5 75.8 0.0017 19.0 0.3 9.5 9 0 0 9 9 9 5 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # 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Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF827-209.fa # 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Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4764 PF15961.5 ZNF839-201 - 5.4e-121 405.7 0.0 6.1e-121 405.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4764 PF15961.5 ZNF839-202 - 0 1262.5 1.6 0 1262.3 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4764 PF15961.5 ZNF839-203 - 6.6e-153 511.3 0.0 7.4e-153 511.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4764 PF15961.5 ZNF839-204 - 2.7e-29 102.5 5.4 6.7e-26 91.2 0.6 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4764 PF15961.5 ZNF839-205 - 2.3e-68 231.7 6.3 2.5e-65 221.6 1.0 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4764 PF15961.5 ZNF839-206 - 0 1263.2 1.6 0 1263.0 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4764 PF15961.5 ZNF839-207 - 8e-237 788.8 8.7 9.3e-237 788.6 8.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4764 PF15961.5 ZNF839-208 - 1.2e-172 576.6 0.0 1.3e-172 576.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:46 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4764 PF15961.5 ZNF839-209 - 0 1263.2 1.6 0 1263.0 1.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:47 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4764 PF15961.5 ZNF839-210 - 3.5e-45 155.0 0.5 3.8e-45 154.9 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:42:47 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF4764 PF15961.5 ZNF839-212 - 1.3e-173 579.8 0.0 1.5e-173 579.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4764) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF839-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- KRAB PF01352.27 ZNF850-201 - 3e-24 84.4 0.7 4.3e-24 83.9 0.7 1.2 1 0 0 1 1 1 1 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF850-202 - 1.6e-240 768.0 232.9 1.2e-09 38.1 0.6 33.9 34 0 0 34 34 34 32 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF850-202 - 8.6e-146 466.9 250.9 6.2e-06 26.4 0.5 33.1 33 0 0 33 33 33 30 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF850-202 - 1.1e-78 252.9 233.7 0.0015 19.2 1.8 31.9 32 0 0 32 32 32 30 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZNF850-202 - 9.8e-54 178.5 227.9 0.00048 20.1 0.2 31.8 32 0 0 32 32 32 27 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZNF850-202 - 1.5e-39 133.8 164.8 0.0012 18.9 1.1 19.7 7 3 13 23 23 23 22 Zinc ribbon domain zf-met PF12874.7 ZNF850-202 - 9.4e-24 83.0 182.8 0.0069 16.7 0.4 27.6 29 1 1 30 30 28 16 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 ZNF850-202 - 3.5e-23 81.3 129.9 0.086 13.2 0.0 28.5 30 0 0 30 30 30 10 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 ZNF850-202 - 1.5e-22 79.0 0.7 2.5e-22 78.2 0.7 1.4 1 0 0 1 1 1 1 KRAB box zf-C2H2_11 PF16622.5 ZNF850-202 - 2.4e-19 68.8 178.0 0.04 13.7 0.1 29.4 30 0 0 30 30 30 13 zinc-finger C2H2-type zf_UBZ PF18439.1 ZNF850-202 - 6.8e-19 67.2 145.7 0.7 9.5 0.2 29.9 30 0 0 30 30 30 11 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 ZNF850-202 - 2.1e-18 65.9 146.0 0.29 11.1 0.5 28.7 27 3 0 27 27 27 8 Probable zinc-ribbon domain XPA_N PF01286.18 ZNF850-202 - 1.4e-14 53.8 135.7 1.6 8.8 0.2 29.7 30 0 0 30 30 30 2 XPA protein N-terminal zinc_ribbon_15 PF17032.5 ZNF850-202 - 2.2e-08 34.7 128.8 0.077 13.8 1.5 16.4 5 4 9 16 16 16 8 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZNF850-203 - 5.2e-241 769.6 232.9 1.2e-09 38.2 0.6 33.9 34 0 0 34 34 34 32 Zinc-finger double domain zf-C2H2 PF00096.26 ZNF850-203 - 2.9e-146 468.4 250.9 6e-06 26.4 0.5 33.1 33 0 0 33 33 33 30 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZNF850-203 - 4e-79 254.4 233.7 0.0014 19.3 1.8 31.9 32 0 0 32 32 32 30 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZNF850-203 - 3.9e-54 179.8 227.9 0.00046 20.1 0.2 31.7 32 0 0 32 32 32 26 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZNF850-203 - 8.7e-40 134.6 165.0 0.0012 18.9 1.2 19.7 7 3 13 23 23 23 21 Zinc ribbon domain zf-met PF12874.7 ZNF850-203 - 3.9e-24 84.3 182.8 0.0067 16.8 0.4 27.7 29 1 1 30 30 28 16 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 ZNF850-203 - 1.4e-23 82.6 129.9 0.083 13.2 0.0 28.5 30 0 0 30 30 30 10 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 ZNF850-203 - 7e-22 76.8 1.4 1.2e-21 76.1 1.4 1.4 1 0 0 1 1 1 1 KRAB box zf-C2H2_11 PF16622.5 ZNF850-203 - 9e-20 70.1 178.0 0.038 13.7 0.1 29.5 30 0 0 30 30 30 13 zinc-finger C2H2-type zf_UBZ PF18439.1 ZNF850-203 - 2.6e-19 68.5 145.7 0.68 9.6 0.2 29.9 30 0 0 30 30 30 10 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 ZNF850-203 - 8.4e-19 67.2 146.0 0.28 11.1 0.5 28.8 27 3 0 27 27 27 8 Probable zinc-ribbon domain XPA_N PF01286.18 ZNF850-203 - 6.8e-15 54.8 135.7 1.6 8.9 0.2 29.6 30 0 0 30 30 30 2 XPA protein N-terminal zinc_ribbon_15 PF17032.5 ZNF850-203 - 6.7e-09 36.4 127.9 0.07 13.9 1.4 16.4 5 4 9 16 16 16 9 zinc-ribbon family DUF3741 PF12552.8 ZNF850-203 - 8.3e-07 28.9 20.9 75 3.4 0.0 18.5 25 0 0 25 25 23 0 Protein of unknown function (DUF3741) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF850-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-C2H2 PF00096.26 ZNF865-201 - 1.8e-73 239.1 140.8 9.2e-06 25.8 1.3 20.3 20 0 0 20 20 20 20 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 ZNF865-201 - 1e-67 221.7 126.3 8.2e-09 35.5 2.5 21.7 23 0 0 23 23 22 15 Zinc-finger double domain zf-C2H2_4 PF13894.6 ZNF865-201 - 2.1e-50 165.0 141.2 0.00036 21.1 2.7 20.3 20 0 0 20 20 20 18 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZNF865-201 - 3.7e-22 78.1 40.7 0.0041 17.4 0.8 17.5 18 0 0 18 18 18 6 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 ZNF865-201 - 5.9e-19 67.8 67.8 0.029 14.8 1.4 17.7 18 0 0 18 18 18 8 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 ZNF865-201 - 7.4e-18 64.1 121.9 0.006 16.6 0.6 19.9 20 1 0 20 20 20 10 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF865-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF865-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF865-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF865-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF865-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF878-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF878-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF878-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF878-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZNF878-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN12-201 - 3.2e-81 264.4 69.4 5.1e-09 36.2 0.5 11.8 12 0 0 12 12 11 10 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN12-201 - 1.1e-56 186.2 66.8 1.8e-06 28.1 0.2 11.6 11 0 0 11 11 11 11 Zinc finger, C2H2 type SCAN PF02023.17 ZSCAN12-201 - 2.5e-44 149.0 6.8 5.7e-44 147.8 6.8 1.7 1 0 0 1 1 1 1 SCAN domain zf-C2H2_4 PF13894.6 ZSCAN12-201 - 3e-33 111.6 62.8 0.0043 17.8 0.5 11.6 11 0 0 11 11 11 11 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZSCAN12-201 - 7.9e-19 67.2 68.7 0.013 15.5 0.6 11.5 11 0 0 11 11 11 9 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZSCAN12-201 - 1.1e-12 47.9 59.2 0.0094 16.1 3.0 8.7 4 3 7 11 11 11 9 Zinc ribbon domain zf_UBZ PF18439.1 ZSCAN12-201 - 9.9e-11 41.0 54.4 0.16 11.6 1.1 12.1 13 0 0 13 13 12 6 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 ZSCAN12-201 - 1.7e-09 37.5 42.7 0.56 10.3 0.3 11.3 11 0 0 11 11 11 4 XPA protein N-terminal zf-C2H2_8 PF15909.5 ZSCAN12-201 - 3.6e-08 33.6 30.8 0.019 15.2 0.8 5.8 1 1 6 7 7 7 5 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN12-202 - 3.2e-81 264.4 69.4 5.1e-09 36.2 0.5 11.8 12 0 0 12 12 11 10 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN12-202 - 1.1e-56 186.2 66.8 1.8e-06 28.1 0.2 11.6 11 0 0 11 11 11 11 Zinc finger, C2H2 type SCAN PF02023.17 ZSCAN12-202 - 2.5e-44 149.0 6.8 5.7e-44 147.8 6.8 1.7 1 0 0 1 1 1 1 SCAN domain zf-C2H2_4 PF13894.6 ZSCAN12-202 - 3e-33 111.6 62.8 0.0043 17.8 0.5 11.6 11 0 0 11 11 11 11 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZSCAN12-202 - 7.9e-19 67.2 68.7 0.013 15.5 0.6 11.5 11 0 0 11 11 11 9 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZSCAN12-202 - 1.1e-12 47.9 59.2 0.0094 16.1 3.0 8.7 4 3 7 11 11 11 9 Zinc ribbon domain zf_UBZ PF18439.1 ZSCAN12-202 - 9.9e-11 41.0 54.4 0.16 11.6 1.1 12.1 13 0 0 13 13 12 6 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 ZSCAN12-202 - 1.7e-09 37.5 42.7 0.56 10.3 0.3 11.3 11 0 0 11 11 11 4 XPA protein N-terminal zf-C2H2_8 PF15909.5 ZSCAN12-202 - 3.6e-08 33.6 30.8 0.019 15.2 0.8 5.8 1 1 6 7 7 7 5 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN12-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN25-201 - 3.5e-41 137.8 49.2 1.4e-09 37.9 0.8 8.6 8 0 0 8 8 8 7 Zinc-finger double domain SCAN PF02023.17 ZSCAN25-201 - 1.6e-39 133.6 2.3 3e-39 132.7 2.3 1.5 1 0 0 1 1 1 1 SCAN domain zf-C2H2 PF00096.26 ZSCAN25-201 - 2.6e-38 128.4 51.6 2.8e-08 33.8 0.7 7.4 7 0 0 7 7 7 7 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN25-201 - 6.7e-20 70.1 49.2 9.2e-05 23.0 0.5 7.5 7 0 0 7 7 7 6 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZSCAN25-201 - 2.2e-08 34.1 22.3 0.034 14.4 0.0 7.3 7 0 0 7 7 7 1 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN25-202 - 1.5e-40 135.8 49.2 1.7e-09 37.7 0.8 8.6 8 0 0 8 8 8 7 Zinc-finger double domain SCAN PF02023.17 ZSCAN25-202 - 2.1e-39 133.2 2.3 3.9e-39 132.4 2.3 1.4 1 0 0 1 1 1 1 SCAN domain zf-C2H2 PF00096.26 ZSCAN25-202 - 9.2e-38 126.6 51.6 3.4e-08 33.5 0.7 7.4 7 0 0 7 7 7 7 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN25-202 - 2.4e-19 68.4 49.2 0.00011 22.7 0.5 7.5 7 0 0 7 7 7 6 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZSCAN25-202 - 7.9e-08 32.4 22.3 0.041 14.2 0.0 7.2 7 0 0 7 7 7 1 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN25-203 - 6.5e-42 140.2 49.2 1.1e-09 38.3 0.8 8.4 8 0 0 8 8 8 7 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN25-203 - 4.9e-39 130.6 51.6 2.2e-08 34.1 0.7 7.3 7 0 0 7 7 7 7 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN25-203 - 1.3e-20 72.3 49.2 7.1e-05 23.3 0.5 7.4 7 0 0 7 7 7 6 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZSCAN25-203 - 6.5e-09 35.8 22.6 0.027 14.8 0.0 7.1 7 0 0 7 7 7 2 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN25-204 - 1.5e-40 135.8 49.2 1.7e-09 37.7 0.8 8.6 8 0 0 8 8 8 7 Zinc-finger double domain SCAN PF02023.17 ZSCAN25-204 - 2.1e-39 133.2 2.3 3.9e-39 132.4 2.3 1.4 1 0 0 1 1 1 1 SCAN domain zf-C2H2 PF00096.26 ZSCAN25-204 - 9.2e-38 126.6 51.6 3.4e-08 33.5 0.7 7.4 7 0 0 7 7 7 7 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN25-204 - 2.4e-19 68.4 49.2 0.00011 22.7 0.5 7.5 7 0 0 7 7 7 6 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZSCAN25-204 - 7.9e-08 32.4 22.3 0.041 14.2 0.0 7.2 7 0 0 7 7 7 1 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN25-208 - 6.5e-42 140.2 49.2 1.1e-09 38.3 0.8 8.4 8 0 0 8 8 8 7 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN25-208 - 4.9e-39 130.6 51.6 2.2e-08 34.1 0.7 7.3 7 0 0 7 7 7 7 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN25-208 - 1.3e-20 72.3 49.2 7.1e-05 23.3 0.5 7.4 7 0 0 7 7 7 6 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZSCAN25-208 - 6.5e-09 35.8 22.6 0.027 14.8 0.0 7.1 7 0 0 7 7 7 2 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN25-209 - 1.5e-42 142.2 49.2 9.1e-10 38.5 0.8 8.4 8 0 0 8 8 8 7 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN25-209 - 1.4e-39 132.4 51.6 1.8e-08 34.4 0.7 7.3 7 0 0 7 7 7 7 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN25-209 - 3.5e-21 74.1 49.2 5.9e-05 23.6 0.5 7.4 7 0 0 7 7 7 7 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZSCAN25-209 - 1.9e-09 37.5 22.6 0.022 15.0 0.0 7.2 7 0 0 7 7 7 2 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN25-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:11 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN32-201 - 9e-45 149.2 41.5 4.7e-09 36.3 1.2 7.6 7 1 0 7 7 7 6 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN32-201 - 2e-34 116.1 51.1 2.7e-07 30.7 0.6 7.5 7 0 0 7 7 7 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN32-201 - 1.1e-21 75.6 51.8 0.00082 20.0 0.5 8.0 8 0 0 8 8 7 6 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZSCAN32-201 - 1.8e-17 63.1 20.4 0.01 16.1 0.1 6.8 6 0 0 6 6 6 5 Zinc-finger double-stranded RNA-binding Myb_DNA-bind_4 PF13837.6 ZSCAN32-201 - 1.2e-16 60.9 0.0 2.8e-16 59.7 0.0 1.7 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SCAN PF02023.17 ZSCAN32-202 - 2.9e-44 148.8 5.1 1.1e-43 146.9 5.1 2.1 1 0 0 1 1 1 1 SCAN domain zf-H2C2_2 PF13465.6 ZSCAN32-202 - 1.3e-42 142.4 44.3 7.2e-09 35.7 1.2 7.5 7 0 0 7 7 7 6 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN32-202 - 2.9e-33 112.5 50.8 4.2e-07 30.1 0.6 7.4 7 0 0 7 7 7 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN32-202 - 2.1e-20 71.6 51.8 0.0013 19.4 0.5 8.0 8 0 0 8 8 7 6 C2H2-type zinc finger Myb_DNA-bind_4 PF13837.6 ZSCAN32-202 - 1.9e-16 60.2 0.0 4.9e-16 58.9 0.0 1.8 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain zf-C2H2_jaz PF12171.8 ZSCAN32-202 - 2.4e-16 59.6 20.5 0.016 15.5 0.1 6.7 6 0 0 6 6 6 5 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SCAN PF02023.17 ZSCAN32-203 - 2.9e-44 148.8 5.1 1.1e-43 146.9 5.1 2.1 1 0 0 1 1 1 1 SCAN domain zf-H2C2_2 PF13465.6 ZSCAN32-203 - 1.3e-42 142.4 44.3 7.2e-09 35.7 1.2 7.5 7 0 0 7 7 7 6 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN32-203 - 2.9e-33 112.5 50.8 4.2e-07 30.1 0.6 7.4 7 0 0 7 7 7 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN32-203 - 2.1e-20 71.6 51.8 0.0013 19.4 0.5 8.0 8 0 0 8 8 7 6 C2H2-type zinc finger Myb_DNA-bind_4 PF13837.6 ZSCAN32-203 - 1.9e-16 60.2 0.0 4.9e-16 58.9 0.0 1.8 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain zf-C2H2_jaz PF12171.8 ZSCAN32-203 - 2.4e-16 59.6 20.5 0.016 15.5 0.1 6.7 6 0 0 6 6 6 5 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Myb_DNA-bind_4 PF13837.6 ZSCAN32-204 - 4.4e-17 62.3 0.0 6.2e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN32-205 - 3e-45 150.7 42.0 3.8e-09 36.6 1.2 7.6 7 1 0 7 7 7 6 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN32-205 - 1.3e-33 113.6 55.6 2.2e-07 31.0 0.6 7.5 8 0 0 8 8 7 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN32-205 - 3e-22 77.4 51.8 0.00067 20.3 0.5 7.9 8 0 0 8 8 8 6 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZSCAN32-205 - 5.1e-18 64.9 20.4 0.0083 16.4 0.1 6.8 6 0 0 6 6 6 5 Zinc-finger double-stranded RNA-binding Myb_DNA-bind_4 PF13837.6 ZSCAN32-205 - 4.8e-09 36.5 0.0 1.3e-08 35.1 0.0 1.8 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN32-206 - 3e-47 157.0 43.2 1.6e-09 37.7 1.2 7.5 7 1 0 7 7 7 6 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN32-206 - 4.6e-37 124.4 51.7 9.6e-08 32.1 0.6 7.2 7 1 0 7 7 7 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN32-206 - 3e-25 86.7 48.5 0.00029 21.4 0.5 7.2 7 0 0 7 7 7 6 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZSCAN32-206 - 1.3e-18 66.7 24.9 0.0037 17.5 0.1 6.6 7 0 0 7 7 6 5 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 ZSCAN32-206 - 7.4e-08 32.0 29.1 0.091 12.5 0.5 6.5 6 0 0 6 6 6 4 zinc-finger C2H2-type zf-met PF12874.7 ZSCAN32-206 - 1.4e-07 31.7 35.9 0.018 15.4 0.7 6.5 6 0 0 6 6 6 2 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 ZSCAN32-206 - 2.2e-07 30.7 45.6 0.0012 18.8 2.2 7.2 6 1 0 6 6 6 3 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 ZSCAN32-206 - 6.7e-07 29.3 26.9 0.024 14.7 1.3 5.3 3 3 3 6 6 6 4 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:12 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:13 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Myb_DNA-bind_4 PF13837.6 ZSCAN32-210 - 1.5e-09 38.1 0.0 2.1e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Myb_DNA-bind_4 PF13837.6 ZSCAN32-211 - 1.5e-09 38.1 0.0 2.1e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SCAN PF02023.17 ZSCAN32-212 - 5.3e-44 148.0 5.1 5.3e-44 148.0 5.1 2.2 2 0 0 2 2 2 1 SCAN domain Myb_DNA-bind_4 PF13837.6 ZSCAN32-212 - 1.2e-16 60.9 0.0 2.3e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN32-214 - 3e-45 150.7 42.0 3.8e-09 36.6 1.2 7.6 7 1 0 7 7 7 6 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN32-214 - 1.3e-33 113.6 55.6 2.2e-07 31.0 0.6 7.5 8 0 0 8 8 7 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN32-214 - 3e-22 77.4 51.8 0.00067 20.3 0.5 7.9 8 0 0 8 8 8 6 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZSCAN32-214 - 5.1e-18 64.9 20.4 0.0083 16.4 0.1 6.8 6 0 0 6 6 6 5 Zinc-finger double-stranded RNA-binding Myb_DNA-bind_4 PF13837.6 ZSCAN32-214 - 4.8e-09 36.5 0.0 1.3e-08 35.1 0.0 1.8 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- zf-H2C2_2 PF13465.6 ZSCAN32-215 - 3e-45 150.7 42.0 3.8e-09 36.6 1.2 7.6 7 1 0 7 7 7 6 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN32-215 - 1.3e-33 113.6 55.6 2.2e-07 31.0 0.6 7.5 8 0 0 8 8 7 6 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN32-215 - 3e-22 77.4 51.8 0.00067 20.3 0.5 7.9 8 0 0 8 8 8 6 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 ZSCAN32-215 - 5.1e-18 64.9 20.4 0.0083 16.4 0.1 6.8 6 0 0 6 6 6 5 Zinc-finger double-stranded RNA-binding Myb_DNA-bind_4 PF13837.6 ZSCAN32-215 - 4.8e-09 36.5 0.0 1.3e-08 35.1 0.0 1.8 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN32-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SCAN PF02023.17 ZSCAN9-201 - 8.6e-41 137.7 2.2 8.6e-41 137.7 2.2 1.8 2 0 0 2 2 2 1 SCAN domain zf-H2C2_2 PF13465.6 ZSCAN9-201 - 9.2e-34 114.4 32.8 3.8e-09 36.5 0.1 7.1 8 0 0 8 8 7 5 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN9-201 - 1e-27 95.0 37.2 1.1e-06 28.7 1.3 5.9 5 0 0 5 5 5 5 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN9-201 - 1.3e-16 59.9 38.2 0.002 18.8 0.9 6.1 6 0 0 6 6 5 5 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZSCAN9-201 - 1.9e-09 37.3 36.6 0.031 14.3 0.6 5.6 5 0 0 5 5 5 5 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:10 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SCAN PF02023.17 ZSCAN9-202 - 1.1e-40 137.4 2.2 1.1e-40 137.4 2.2 1.7 2 0 0 2 2 1 1 SCAN domain zf-H2C2_2 PF13465.6 ZSCAN9-202 - 2.9e-33 112.8 33.0 4.5e-09 36.3 0.1 7.1 8 0 0 8 8 6 5 Zinc-finger double domain zf-C2H2 PF00096.26 ZSCAN9-202 - 2.3e-27 93.9 37.2 1.3e-06 28.5 1.3 5.9 5 0 0 5 5 5 5 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 ZSCAN9-202 - 2.3e-16 59.1 37.9 0.0023 18.6 0.9 6.1 6 0 0 6 6 5 5 C2H2-type zinc finger zf-C2H2_6 PF13912.6 ZSCAN9-202 - 3.7e-09 36.3 36.6 0.036 14.1 0.6 5.7 5 0 0 5 5 5 5 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Sun Jan 14 08:43:42 2024 # [ok] # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29-2/ZSCAN9-203.fa # 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